Array 1 215028-212496 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJF01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001351 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215027 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214966 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214905 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214844 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214783 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214722 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214661 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214600 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214539 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214478 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214417 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214356 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214295 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214234 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214173 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 214112 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 214051 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213990 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213929 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213868 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213807 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213746 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213685 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213624 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213563 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213502 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213441 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213380 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213319 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213258 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213197 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213136 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 213075 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 213014 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212953 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212892 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212831 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212770 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212709 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212648 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212586 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212525 29 96.6 0 ............T................ | A [212498] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232286-231648 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJF01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001351 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232285 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232224 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232163 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232102 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232041 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 231980 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231919 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231858 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231797 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231736 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231675 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //