Array 1 57576-58072 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NUMM01000028.1 Bacillus thuringiensis strain AFS039774 AFS039774_110_G5_Contig28_140523, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     57576	    36	  94.4	    30	.......T............T...............	GACGGCGGAACGATAGTCATTGCACATTCT	
     57642	    36	 100.0	    30	....................................	CGGTTTCAACTCCTTTTAAGGCATTTCTCA	
     57708	    36	  97.2	    30	................G...................	CTCTTAACGAATCCAGTAGCAGCAGAACAT	
     57774	    36	 100.0	    30	....................................	GTTGATAGTCGTATTAGACAGATCGTAGAA	
     57840	    36	 100.0	    29	....................................	CCAATCCATCATGCATGGGTGGTAGTTGA 	
     57905	    36	  97.2	    30	................G...................	CCTAACATATTTAAATGTAGTTTCATGTTG	
     57971	    36	 100.0	    30	....................................	GTTAATACATACTCTTAATCCTTATAATTC	
     58037	    36	  91.7	     0	................GC..............C...	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  97.6	    30	ACCATAGCATAGCGATATTTCTTATGGAACTATAGC	                              	       

# Left flank :   CCTAGCTTTACTTTTTTGTTTAGTCTTTTTCCCAATGATCTAATCCAAATTGTCCCCTCAAAAAATAAAATAATTAAAGCTAGAACAACTGTATCGAAAAAAGAGGTATTACTACCCTCACTCACAGGATATTTTAAAGGTGTTCATAGTGGAACTGCTGGGATTACTGTTGAAACACACGATGGCAGTATTATAGCAAATGTAGGGTCAAAGCAATTACTATTATTTGAGAAATACCAAGTAGATGTACTTGGACATTATACAAAAATAAAGGAGGAAAAACGTATTGGGATGGCGATATAGAATGGTAACAAAAAGAGCGCAGCTTGCTAATATGGAATTTTCAATAGAGAAACATATGCAAACAAAGAAGATGCTATCTCTACTCAACTTACTTTATTTTAAAAAGAAAAAAATCACATTCTAAAAAAAGGAAATCCCTCCTTTTTCAAATTAAAAAACCTTGTCTAACCCTATAGTGACAAGGTTTTTTGACACCT
# Right flank :  CTCGCCGCCCATAAACAAGCTTATTTTTCTATCATTTTATATTAATATTATATATTACAATGCCTTATATATATTTTTAACAAAAATATATATCCCAAACCTAAAAGACTAAATATAACTTATAAATTTACTTATCAAATAGCCTCCAGCAAGGAAATTGTACACTTACTCTTACTTTAAAATCAGTAAGTTTTATTAGTACATTTACATAAATAATCCCTTCGCCTATACACAAAAGAATTATGTTATAATAACTACTGAACATATGAATAGGATAACAACTACCTGCTGTTGGCAAGTAGAAATTTATCTAATAAAAAGATCACCTGTTTCCAAGACAAGTGATCTTTTTGTATACATTTCCTGTATTTTTTTGAGATTCCATTTGCCAATACTACCCATAAAACTTTATAAAAAGTGTTCTCCTGCCACTAAAAACATGATTAACCAAAAACACACTATCATAAGACATACAGTCCTACATTTCCCTACAAAGGACT

# Questionable array : NO	 Score: 3.12
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ACCATAGCATAGCGATATTTCTTATGGAACTATAGC
# Alternate repeat :   ACCATAGCATAGCGATGTTTCTTATGGAACTATAGC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-2.80,-0.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//