Array 1 162609-160705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETA010000002.1 Salmonella sp. 32120203201500024SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162608 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162547 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162486 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162425 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162364 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162303 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162242 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162180 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162119 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162058 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161997 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161936 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161875 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161814 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161753 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161631 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161570 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161509 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161448 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161386 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161283 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161222 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161161 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161100 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161039 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160978 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160917 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160856 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160795 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160734 29 96.6 0 A............................ | A [160707] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180233-178740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETA010000002.1 Salmonella sp. 32120203201500024SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180232 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180171 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180110 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180049 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179988 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179927 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179866 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179805 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179744 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179683 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179622 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179561 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179500 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179439 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179378 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179317 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179255 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179194 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179133 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179072 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179011 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178950 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178889 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178828 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178767 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //