Array 1 61361-59377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUN01000026.1 Pseudomonas dryadis strain P27B NODE_26_length_99885_cov_21.411666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61360 29 100.0 32 ............................. AATGGCGCACTGACCGCAACGGGTGCAGTCGC 61299 29 100.0 32 ............................. TCGAATTCCTGCGAAACGGTCAGCCAGTCGAT 61238 29 100.0 32 ............................. CGGGTTGGACAGTGAGGGCGGCCTGGGCTTGG 61177 29 100.0 32 ............................. GTAATTGATGCTGGAGCGTCGTGATTATTCGT 61116 29 100.0 32 ............................. CGACCAACTACAGGCGGTTTAAGCAATGGACC 61055 29 100.0 33 ............................. TTGTAGTTGACCTGCGGCAGCGGGCGCGGCAGC 60993 29 100.0 32 ............................. CCGCGCGGCAGATGCTCGTAGACCTCGCTGCA 60932 29 100.0 32 ............................. CACGTTATGCCGTCAACTCGGCTGTTCTCAGA 60871 29 96.6 32 ............................T CCTGAACGAGATAGTGCGATACCGCATCGATC 60810 29 100.0 32 ............................. TCGGCCTCCATGACCGCCCTATACCGTGACAG 60749 29 100.0 33 ............................. GACGGCAGCAAGGGTTACCAGTACCGGACGGCC 60687 29 96.6 32 A............................ GCCGCCGCGCCCGTTCGTGAGAATAATCAGGC 60626 29 100.0 33 ............................. CTGTATTCGATGGCGTTGAAGCCGATAGACAGG 60564 29 100.0 32 ............................. TTCGTCCACGCAGAGAATGACTCGACATTGGC 60503 29 100.0 32 ............................. TCTCCGCCCAGGCGCAGATCCAGCCGAGTTAC 60442 29 100.0 32 ............................. ATGACAGTTTCTCGGGCCGACTCTGCTCTTTG 60381 29 100.0 32 ............................. GCCTAGGCCGTAGCGCTGCTTGTGGCGTCTAG 60320 29 100.0 32 ............................. AGGTGTTACCCGATGCCTAATATTTTCAATCA 60259 29 100.0 32 ............................. GCAATACAGGAAGCCATCGACGCGCTGCATGT 60198 29 100.0 32 ............................. TTGCTACCGCACTCAGGACACGGGAAGGTTTC 60137 29 100.0 32 ............................. GTCTACTTTTCCAGCTCGCCGACCGTCAAGGG 60076 29 100.0 32 ............................. TCCGAGATGAACTGTCGGTTGCGCAGCAGCCA 60015 29 100.0 32 ............................. CCAGGAAGAGCTGATGCGCGATAACGCTCGCC 59954 29 96.6 32 ............................C AGTTGAGGACTATGGAGTCCGCGGCTCTGGAG 59893 29 100.0 32 ............................. GCCCAGGTCATCGCGAACGGCCAGGACGATCC 59832 29 100.0 32 ............................. TGTGGGGTTACTCGATCCTGGGCATTGGTATT 59771 29 100.0 32 ............................. CGGAACAGGTCGCCGCGGCGCAGATTCCAGAC 59710 29 100.0 32 ............................. ATCAAAGGGCAGCGCAAGTGGACACGCTCGAA 59649 29 100.0 32 ............................. GCTGCGCAGCGTCTTGCTGTTCGTGGCGTTGA 59588 29 100.0 32 ............................. ACGGCTTGCAGGTTCTCGGCTTCGAGGGCGAT 59527 29 100.0 32 ............................. CGCGCAGTCGTCTATGTGGGCCTGGACGCGCT 59466 29 100.0 32 ............................. GCCAAGGGCCTGGATCTAGACATCGTGTGCTC 59405 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCATCATCGAAGAGGTGCTGGCCGCTGGCGGCATCTCACCACCCGAAGCGCCGCCCGAGTCGGTACCGCCGGCCATTCCCAATCCTGAAAGCATCGGCGATGCCGGCCACAGGGCGCAGTAGTGAGCTTTCTGGTCGTGGTCACCGAGAACGTCCCGCCGCGCCTGCGCGGACGTATGGCCATCTGGCTGCTGGAGGTACGCGCCGGGGTCTATATCGGCGATGTCTCCAAGCGCACCCGGGAAATGATCTGGCAGCAGCTCAGTGAGGGGCATGAAGACGGCAATGTGGTGATGGCCTGGGCCAGCAACCATGAGTCCGGTTACGAGTTCCAGACCCTGGGTCCCAACCGGCGTTTGCCGGTAGAGTTCGACGGTCTGCATCTGGTCGCTTTTCACCCCCTGGACAACCCCGATCTTTAACAAGGAAATGTTGGTAGATTTTTAGCGGCTAATTTTTCCTTTCTGGAACAGTTGGTTACGCTAAGT # Right flank : TACAACTCGAAGGACGTGTTGCTGAGCCTGATGTGTTCCCCGTGTCAGCGTGTGCCGTCCTTGCACGGGGGGCCGCCTTCCTGGGAGGAGTGTCAGCGGCGGTCTGAGGGATTAGACCGCCGTCGCTTCCGGTGCGTGGCCCTTCAGCCCCGCGCCTGAACCGTGTGTCGTTTCCGTCGTCTCGCGGCCATCGCCGTGGTCACGAAGATTGCCGCGGCGAGGCTCAATGCCAGCGGCAGCCCCTGTGGGCGGTCGCTCATCAGGGCGCCGCTGAGCACGGGGCCGAGCAGGCTGCCGATGCCCCACAGCAGGCCGATGCAGGCGTTGGCGGTGACCAGGTCGGGGCCGCGGAAGTCCTGGCCGATCAGTACCAGGGCCAGGGTGTAGATACCGCCGGCCGCGGCGCCGAGGACTAGCAGAGCCGGCCATAGCAGGGTGCGCTGTTCCATCAGACAGGGCAGGGCCAGGCCGAGGCCCAGGGTCAGCACGCCGCAGAACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72164-70793 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUN01000026.1 Pseudomonas dryadis strain P27B NODE_26_length_99885_cov_21.411666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72163 29 100.0 32 ............................. CCAGGCTTATGTTCTGTAGCTCGCGCCTCTCA 72102 29 100.0 32 ............................. GCTGTTGAGGCTCCTGTTGTTCAGTCTCAGCA 72041 29 100.0 32 ............................. CTGGTGATTGGTTTCTCGCCTACCGTCCTCCC 71980 29 100.0 32 ............................. GTCGTTGGACTCCAGAATCTCGATAGCGCGCT 71919 29 100.0 32 ............................. ACAAAACGAGTCGTGATGAGATTTTGGAATAC 71858 29 100.0 32 ............................. GCCCGAAAGGGCCTTTATTGGTTTCTATACGG 71797 29 100.0 32 ............................. CAATGGACCACGGCAATATTTCAAGTCACTCC 71736 29 100.0 32 ............................. CCAGAGGCGATCACGCTTATGGGGCGCGCCGC 71675 29 100.0 32 ............................. CCGCTCCGATTTGGGCGAGCCTACCTGGCGCC 71614 29 100.0 32 ............................. CGTGAGTTGGATCGGCTGGGGTAGGGCAGGAA 71553 29 100.0 32 ............................. GCGCTTCCGCCCGCAGAACATGGCAAGGACGC 71492 29 100.0 32 ............................. TCGTTCCGTCGTGCGGCGCTCGGCGCTTATCG 71431 29 100.0 32 ............................. ACGACCACGCGCTACGAGCGCTCGCGCCGCAT 71370 29 100.0 32 ............................. CCAAGTACCGGGCTAGCGTTCGAGGCGAGTTC 71309 29 100.0 32 ............................. GCGGCTGGATCGCCAAGGATGGTTACAAGGGG 71248 29 100.0 32 ............................. GAACGACGATTCGCGGCCTGCGCCAAAACGGC 71187 29 100.0 32 ............................. GTCGCGGGCGAACACCATGAAAAACAGCGCAC 71126 29 100.0 32 ............................. ACGGTACTGAGATTATCTTTTATGTTGCACGT 71065 29 100.0 32 ............................. TCCGGGGAATCGTTCGGTTGTGTATCTCTGCC 71004 29 100.0 32 ............................. AATTACCAGCAGTGGGCCGCCGGGCGCAAAAC 70943 29 100.0 32 ............................. AGCGATCAGCCCGACGAGCAGTCGGTTTTCAT 70882 29 100.0 32 ............................. ATAGTCGGGAAACCGACCGAGCTGCGGCACAA 70821 29 89.7 0 ............CC.............G. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : AAGACAGCATCCTGCCGCGGCTGTACCGCGAGGCACCGGTCAACTCCACCTGGGAGGGCTCGGGCAATGTGCAGTGCCTGGACGTGCTGCGCGCCCTGTCCAAGGAACGCGGTGTGCTCGATGCGTTGCTCGCCGAGTTGGGCGACGGTCACGGCGAGCCCCGGCTCAAGGCCCATGTCGCGCGGTTGCACAGCGCCTTGCAAGACCGCGAAGACAGCCAGTACCGCGCCCGGCAACTGACCGAGGACATCGCGGTGGCGCTGCAGGCCGGGCTGTTGCTCGAGTCCGGCAACAGCCTGGTGGCCGATGCCTTTATCGCCGCTCGTCTGGGCGAAGGCGGACGTGTCTATGGGACCCTGCCGCGCGGTATCGACGTACAGGCGCTGCTGGCGCGCAGTAGCCCCTATCCGGCCTGAGAACAGAGCGCTCTTTGCCAAGGTAAAGTCGGTGGATTTTCAGCAGTCTATTTTTTCTTTCAGGAACAATTGGTTACGCTAAGT # Right flank : TTGTGGGGCTTGCCCTTGGACTTCTTGCCGGTGGGGCGCTCCATCGGGGCCGAATAGACGTTCGGCAGGTCCTCTGTTGCCAGCTCTCTGGAGTGCTGGCACTTTGCATCGTTTGCCGATGCCATGTGATCTTCGACGATCCACAGGAGCCTTAGATGAACGGATTTTCCAGTTTGAGCGATCAGGCCCGCCGGCTCTGGGCCAAGAGCGGCGATGGCTTCGGCCATGGTGTACTGGCCCACCTGCTGGATGTGGCGGCGGTCGCTGAGCGCATGCTGGCGCATGAACCGGCCAGCAGCCTGGATTGGGCGGCACAGGCTCTGGGTCTGGAGCGCCAACATGTAGCGCGCTGGATCGCCTGTCTGGTCGGACTGCATGATTTCGGCAAGGCCATCCCCGGTTTCCAGGACAAATGGGTCGAAGGCCGACAGGTGGATGAGGCGCTGGGCCTGTCCTTTCCGGCGGGTTCGCTGGGCGTGACCGACCATGCCTGTGCCAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //