Array 1 19133-21677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEIE01000024.1 Streptococcus suis strain LS9R, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 19133 36 100.0 30 .................................... TATTCGCCGGACTCCTATGGGCTACCTATG 19199 36 100.0 30 .................................... GCACCCACATTCTTCGCAGGTCTCAATTTT 19265 36 100.0 30 .................................... TGCTCTGATTGTCTTTTGACAGCAGGGGCT 19331 36 100.0 30 .................................... TTGGGAAGAACACTATGGACCTATTCCAAG 19397 36 100.0 30 .................................... TACGACTTGCCAATCCAAGCAAGCGAACTA 19463 36 100.0 30 .................................... GGTGGTACCTGCGAGCCTTCTCTCTGCGCT 19529 36 100.0 30 .................................... ATCCCAAGAGTCTGCAAGTCCTTCTGGATC 19595 36 100.0 30 .................................... GAACAAACTGTAACGGATTTAATGCGGGTA 19661 36 100.0 30 .................................... AGCTGAAATGCAGGCGAAAACTAAAGAAAA 19727 36 100.0 30 .................................... CGAACGATTGGAGAGGTTGTGGATGTGTAT 19793 36 100.0 30 .................................... TTATAAAATTTGACGAAGACACACTAGCTT 19859 36 100.0 30 .................................... TAAGTATAGATGTGTGTGGTGCTACGAAGC 19925 36 100.0 30 .................................... CCATCAAAAATCGCTTGACGTCTGGTGCTT 19991 36 100.0 30 .................................... TATTCAGCTACGAGAAGGGCAACCGCTTTG 20057 36 100.0 30 .................................... AATTAGCTCAAAGTGTTAACGTGTCTAGTT 20123 36 100.0 30 .................................... CTGATGTTGTTCGACACAACTTATCAGAAG 20189 36 100.0 30 .................................... GCTTTTGATTGGATATGATGCTGAATCGCT 20255 36 100.0 30 .................................... TCATAGAAAACTCAAATTTCAATCTCTAGT 20321 36 100.0 30 .................................... TACAATGCTTTCAGCTTTAATATTCAAAGC 20387 36 100.0 30 .................................... GCTATGTTATGTCTGTGTGGTTTGAGGAAT 20453 36 100.0 30 .................................... TATGAGCGAACAGGCCTATCTTGCTACGCT 20519 36 100.0 30 .................................... TCTTGCAGGCAATTGCTGATGATAAAGCCT 20585 36 100.0 30 .................................... CACGACGACCAATAGCTGGCATCGAGTCGC 20651 36 100.0 30 .................................... CAAGTATAGATGTGTTTGGTGCTACGAAGC 20717 36 100.0 30 .................................... TGTAAAGACTGTCATAATAAGCGCCACAAT 20783 36 100.0 30 .................................... AGCTACAAGGGTTCTTCTTTCTTCTGGTGT 20849 36 100.0 30 .................................... GGAAAAACTAACCAACACGCAAAAAGATAT 20915 36 100.0 30 .................................... TCAGTCTTAGCGACATCTGTGACGGTCTGT 20981 36 100.0 30 .................................... TTCCTTTGCGTTAGCCCATCTACAGTTAGA 21047 36 100.0 30 .................................... GGACAAACAACGAACAGACAGAAAATGATT 21113 36 100.0 30 .................................... TGTATTCAAATCTATGTTAACCTCATTTTG 21179 36 100.0 31 .................................... TTGACTTATCAGCACCTCATTCTTCCTCAAA 21246 36 100.0 30 .................................... AACGCTAGGGAGCTAGATTTGAAAGCCTAA 21312 36 100.0 30 .................................... ACACCGTTTGTAAATAAGTGGTAGTCAAGG 21378 36 100.0 30 .................................... TATCATCTCAACGCTGATATGAATGTCATA 21444 36 100.0 30 .................................... TTACTTTAATTGGTAATGGTTATGACGCAT 21510 36 100.0 30 .................................... GGCTACCCACACAATAAATGCTGTCAGAAA 21576 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 21642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCCTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTAGGAACTGGTTCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //