Array 1 3006349-3004685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016569.1 Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00320 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3006348 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3006287 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3006226 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3006165 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3006098 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3006037 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3005976 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3005915 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3005854 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3005793 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3005732 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3005671 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3005610 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3005549 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3005488 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3005427 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3005366 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3005305 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3005244 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3005141 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3005080 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3005019 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3004958 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3004897 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3004836 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3004775 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3004714 29 96.6 0 A............................ | A [3004687] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3023733-3022607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016569.1 Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00320 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3023732 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3023671 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3023610 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3023549 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3023488 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3023427 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3023366 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3023305 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3023244 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3023183 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3023122 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3023061 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3023000 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3022939 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3022878 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3022817 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3022756 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3022695 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3022634 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //