Array 1 697030-697986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072426.1 Pseudoalteromonas viridis strain BBR56 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 697030 32 84.4 33 .G.C..T.....C............G...... TAACTTCAAAAACTGACAATCACTAGTCTCAAC 697095 32 96.9 34 .........................G...... CTTTACCATATTCATATCCTTATGGAAAAACGAG 697161 32 90.6 33 ........G......A.........G...... ATGATAATGATCCCTTTTGTATCTTTTGTTATG 697226 32 93.8 33 ...............A.........G...... CTTGCTGAGCATGATTTAAGAGTAAAATCGGGC 697291 32 100.0 33 ................................ GGCAGTAACGTATTTTATGTGGGCTCTAAACAG 697356 32 100.0 36 ................................ AGCAATTATGGTGGTCAGCGTCCATTCTCAAAACGA 697424 32 100.0 34 ................................ TGAAGTTCTTGCTCGCTGCCCATATTGCGAGGAA 697490 32 100.0 37 ................................ GTCATGGTACGCATTCCTAGGTTTAATTATGAGGATC 697559 32 100.0 34 ................................ AATGATGCCACAGGAAAATATTCCGGCGGTTGGC 697625 32 100.0 34 ................................ TCTCGCAGCTTTAGCTGATCTGGCAACGGATATG 697691 32 100.0 34 ................................ TAGTTGTACAAGACGCTGGGGGGTAACCCCAGCA 697757 32 100.0 34 ................................ CATCCAGCAGCTGCAAACCAGCCTGCTGGATGAA 697823 32 100.0 34 ................................ TTATCGTATGCGCCAACAAGTCCATTCTGAATAA 697889 32 100.0 34 ................................ TACCGCATCATGAAGGAATATTCAACGCAAACTT 697955 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 97.7 34 GTCTCAATCCGCTCATACGCGGGTAACTCAGC # Left flank : ACGAACAAATCGTCTCAATCCCCTCTAAAGTCGGAGTCTCCAGTACTTTTATTTTTTTCTTTTTAACTCTTGTTTCATCTGTCTCAATCCCCTCTAAAGTCGGGGTCACCGGTACTATAGCGGATCGAGGCCGCGTCGTACAAGGGCTGTAGGGGGTAAAAATGTCGATGTCCTGTCGACTGTTCCCAAAACTGCTGACTTACTGACATTTTAGCTATTCTTAAACTAGTAAAAGGCATAAAATTCAATGACATGCTATCTAAGCTACTGACAAAATGTAATTTTTGTTTTGACAGTAGATCGTAACGCATTGATTTAGCGTTTATAAATTACGATCAGAGCAACTTAGCATGCAAAAACACGCTTTAATGTAGGGTATTGAATGGAAGCAGCCTTTAAGCCAATTTACGAAAAAAATGCCGGGCGTGAAACCAAAGGCCAGAGTTTATTTCCACACAGCCAAAACCCCATTGCAAAGCAACAGTTCCGTCTGTTTAGTA # Right flank : CAGCCGGCTTTGTACCCCGCTGGCCACAAGGGCTAAGCTGGGATTTGCGCTAACCTCTGAGACATTTGCTCAATGCTCACCATTGCGTCGGTGCTAAGGTACACAACTTTTTAATAAACATCAACTTACAAAAGCGCTAACCTACCGGGGTTTTGCTGAGTACCAGGGGTTAGCGCTGGCGGCATTGTTGCACAGGTAAGCAAATGTTGTTTTATTACCAAGCCGTCGGCCCGCAATGCCGCCCGAACAAGGGAATGACCCCTGTCTTATTAGGGCTATACACAAGCCTGGTTATCTGCGATTATCCTTCCAATGAGGTTTGCGCTTATTCCTCGGCTTGTTGTGACCGGCCTGGTTAATATTATGCCGGGGCTTGTTATTGTTGCCCCCTTTACCTTTTGGCTTTTCTAGTTCCACTAGCGGTTCAGAACGATTGTCACTATCCGTTCGTAAAAATTGTGGTCCTTCTTCACTACGACTACGGTCATTCGCAACAAACC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCGCTCATACGCGGGTAACTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 1272885-1271754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072426.1 Pseudoalteromonas viridis strain BBR56 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1272884 29 100.0 32 ............................. TTAATGACGTTTGGTACGCTGACGCAGAGATC 1272823 29 100.0 32 ............................. CGGAATTAACAGTAAACGGCAGCGGTCAACTT 1272762 29 100.0 32 ............................. TTTACGGTATGCTAAACCACCCTGACCGCAAC 1272701 29 100.0 32 ............................. TAGCGGGTTTGTAGTTGGGCCAGACTCTAAGC 1272640 29 100.0 32 ............................. GTGCAATAACTATGGGTATGCACGCACAAACG 1272579 29 100.0 32 ............................. TTGATATATTTCAATATCATTTTTGATATATT 1272518 29 100.0 32 ............................. CCAGAGCCTGAACGGCGTGCGCGATGGCGTGG 1272457 29 96.6 33 ............T................ GACGCCGCATAATGGATTTTTTTAACCTAAAAC 1272395 29 100.0 32 ............................. GTCTTTTAATGCATCAAACAGCGTTAATAATA 1272334 29 100.0 33 ............................. TTGAAATTTACCGCTATCGTCATCCGGCTCTAC 1272272 29 100.0 32 ............................. TGATTTCAGCCTTAGCGAACTTAAGCTGGCAT 1272211 29 100.0 32 ............................. CCAGGCATTGCAACATTCACAGCACCGTACAT 1272150 29 100.0 32 ............................. AGAGCCGCCTGGTGCTTGAGATTGTTGAGCGA 1272089 29 100.0 33 ............................. CGGCTAAAAATCGCGCTTAAACTATCGAATGAA 1272027 29 100.0 32 ............................. CATTACCAACGACGCATCCACCAAATGCTTAT 1271966 29 100.0 32 ............................. CGGCCACAATTGCTAAGCTGGAAACGAATACT 1271905 29 100.0 32 ............................. AATGGATTCAACTAGGTATTGTTGATGTCGAT 1271844 29 100.0 33 ............................. CCGATCAGCATGGTCAGCCACTTATCAAAAAAT 1271782 29 75.9 0 ........T.A..T.G......GA...T. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.6 32 GTGTTCCCCGTACGCACGGGGCTGAACCG # Left flank : AATTGGCGATGAAGGTCATCGCAGCGGAGGCCCACTATGAGTATGTGCATGGTTGTGACTGAGGCAGTACCACCTAGGTTAAGAGGCCGCCTGGCAGTTTGGTTGCTGGAGATCCGTGCAGGTGTGTACGTGGGTGACGTAAGTAAACGCATTCGTGAAATGATCTGGTTTCAAGTCAGTGAACTGGCGGAAGACGGCAATGCGGTTATGGCCTGGGCAACCAACACTGAGTCGGGTTTTGATTTTATCACCTATGGTGAAAATGCTCGAATGCCGGTGGATTTTCAAGGGCTAAGGCTGGTGAAGTACACCCCAAGAGCCGATGACAATCAGGGAGGGGATTAGCGAATTATTCCTTCATTCCATCTGTGATTTATTGCTCTTTAACAAGTTGGATATTGAGATTTAAAGCTCAAAAAATAGATATGTTTGTACCCAATATTTTTGGTGGATTTTTAAGTGTGTTTTTTCTTTATAAAAAACAAGTATATAATTTTAGA # Right flank : GAGCATGACGAACTGAAGGTGCATGTTGATCAGAGTCCTCACATACACCAAACCAACAACCAGCGTACGATGAGGGGCAAGTGTTAATACAATGAAAGGTATAGATAATTTCTTACAAAATTGTGCTACGACCGGGTTAACTCCGCCTTGCAATGCTTTTTGTGATGAGAGATAGTTCGGCTCTAAAAATATGAATAATAACAATATTAAGGATAGTAGGGATGAAAAAGAGCGCGTTGGTGTTGGCTGTGTCGGCGGCGTTGGTTATGTTGGGCGGTTGTACTCAGCATGTCAGCTCAAGCGATAAGAGTGTGCATGCTCAGGTGCAGCATGGCCTTAAATCGGGGGTTGAACTGCAAAACTTTGATATGAACGTCAGGCCACAGGATGACTTTTATCAGCATGTTAATGGTAAATGGTTAAGCACAACCGCCATTCCGGCTGAGCGCTCGTCGTGGGGTAGTTTTGACAAGCTGCGTTACGAGTCCGATGAAGCGGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1287378-1285576 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072426.1 Pseudoalteromonas viridis strain BBR56 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1287377 29 100.0 32 ............................. CTTATATGGTGTTGCCAGTATCAAAGAAGCGC 1287316 29 100.0 32 ............................. GTGACGAATTCGCCGTCATCACCGGTGGCACC 1287255 29 100.0 32 ............................. TTTGCTGTGTTGCTCATTGATATACTCCCTGG 1287194 29 100.0 32 ............................. CTGTCAGGTCTGCCGACTAATGCACTATCACT 1287133 29 100.0 33 ............................. TGGGCAGACATTTATATCCTTTTATATACCCGC 1287071 29 96.6 32 ............................T GACCATCTGGCGTTTACGTTCAAACTGGCGGA 1287010 29 100.0 32 ............................. CAATGATCCAGATTTGTTTCTAATTCAGTTTG 1286949 29 100.0 32 ............................. AGTTTGTCACCAATCACGAACAACAACGCAAA 1286888 29 100.0 32 ............................. GTCCTGGCCTTGTAGTGACGTAGATTTAGCCA 1286827 29 100.0 32 ............................. GATCAGGATCTGTCGCTGCAACTAGATGACCT 1286766 29 100.0 32 ............................. CGTAATGAGTAATAAACCCGCCCTGACGGCAA 1286705 29 100.0 32 ............................. GGGCTAAACCTGGATTTGATGCACGGTGACAT 1286644 29 100.0 33 ............................. CGTGTGTTGCGGTTTTAAGTTTACCCATGCAAC 1286582 29 100.0 32 ............................. TAACCAACATGCAAGACCTAGCCGAAATGGAC 1286521 29 100.0 32 ............................. GGTGATGATAGCGATGCAGGTTTAGAAATAGA 1286460 29 100.0 33 ............................. CGCTTTTTGCTGCCCAGCCAGTTCAGTCTTTGC 1286398 29 100.0 32 ............................. AAAAGAGCGGCTGAACGACGCAGCAGTAGACA 1286337 29 96.6 32 ............................T GTATTTATTTGAGAGCTGACGGCACTGTCAGT 1286276 29 100.0 32 ............................. CGAACATGGTGGCTACGCTCGATCTGTCGATT 1286215 29 100.0 32 ............................. TTTTTGTTCGTTTGAAGTCCGGGCAATGCTCG 1286154 29 100.0 32 ............................. CGCGCCCATAGCGGCACGTTTACTAACCGGGT 1286093 29 100.0 33 ............................. CCAATGCCGTTGTTGGCCTGGGTGCCAACATGT 1286031 29 100.0 32 ............................. CAGATAGCAGCAGAAAGCGTTGGTCTTCTCAC 1285970 29 96.6 32 ............................C TGCGACTTTGCGCTAATCACACCTGCGGAGTT 1285909 29 100.0 32 ............................. AGCGTCCCGCTTGGTTAATCTCCCAGACTACA 1285848 29 96.6 32 ...................A......... TCTGTGCTAACCGAACCATCCACTGTGCTGTT 1285787 29 100.0 32 ............................. ACTAATAAACTGAGAGATATGGTAGGTTTTTT 1285726 29 100.0 32 ............................. CATAACGTTTATAAATTTAAAATGTCATGGCT 1285665 29 89.7 32 ..........C...AG............. TGATCGAATGCCAGCTTTATGAGTGCCATGTA 1285604 29 82.8 0 ..........C.G..G.A.....A..... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.6 32 GTGTTCCCCGTACGCACGGGGCTGAACCG # Left flank : CTTCTGGTTCGACACCCTCCAGCTGATCATACTTAACGTGCTGTTCCCAACCCTGACCGCGCTGCTAGGGTACGTATTTGGCACCAGCAGAAATAATGGGGCGTAAAGAGGGTGGAAGAATGCAGGGTTTGTATGTGGTTGCAAGCTTTGTACGACAAGGGCGAATTCTGGCTTGATGGCCACTTTCTCTATCTGTTTGGCTTTTTTACAACGGTGTGCTTTGCCGTTATTGAGGCCGAATGGGTGCTCTTACTCACCTCGCCGCTGGTGGCATTTTTAGCCGCGATACTGCTTGGCCTGATCTTGTTCTGTTTGTTTATGACCCTGGCTATAACTCTTTTTTCCTGCCTGCTGTGTTGCTACATTAAACAGATGCTCTTTAACAACATGACTAGATAGCGAACAAAAATCCGAAAAGCAGGGCCAAATTTGTACCCAATATTTTTGGTAACTTTTTCCATGCGATTTTTCTTTAGTGAAAACAAGTATATAATTTTAGA # Right flank : AAATTATGGTTGGGGTGTAGTGTTAGTTGGCTTAGATTCAGCAGCTAATGATTCGCTCAGTTCCTTATTGTCTCGGTATCCTGAAGCAATATCACTTTTAAGGTTTGTCCGTGCCTCATCCGTCATAGTTACCAGCTCTCTAATATCTTCGTTGTCTACTTGCATAGAAACATCCAGAGCTTCTTCGTATGCCTTCCGATACTCTTGGCGTTTTTCTTCAGAGATGTGAGGGTTGTTTATAGCCTTTTCGAGTGAATCAAGTTGAGATTTCGCTTTTCTTTTAAGTAAAAGCTTGAACAAACCTAAGACCCCATAACTGGCGGCTACTTTAAATACAAAAGCGATAAAGAGGGTTAAGCCCGGTATCAAGGAAGTTGCAGCTAACTTTATTTGCTCATCCGGCAAGTCGTTTGCAAAGTACAATAAGCAGCCCCCGATAACCGAAGCACACGTATTGGAAATTGCAGCAGCTTTCGTAGTCATTACACCTTCCTTCGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //