Array 1 2093-1210 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISE01000006.1 Cronobacter sakazakii strain CS-44 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2092 29 96.6 32 ......T...................... CATTTTCTTTATCACACAACTTTAATTGCCCT 2031 29 100.0 32 ............................. TGCTCTCGTTAGATTTAAACCAGCTGACCAGG 1970 29 100.0 32 ............................. AGCTCAGCGGCGCAATTATCGATTTCCGCGGC 1909 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1848 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1787 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 1726 29 100.0 32 ............................. CGTCCAGCAGAGACAGCAGAAACGGCAGCAGT 1665 29 100.0 32 ............................. ACAAGCCGCAGCGGCGGCGGGGGGTTATTTTG 1604 29 100.0 32 ............................. GGGGCGGTGTTGTTCTTTAGCGCGAAGCGCTG 1543 29 100.0 32 ............................. AGCAAAATAGATAACGCACAGAACGAAAACCT 1482 29 100.0 32 ............................. CCGAACATGACCTGATGCGCCTGGCTATCGAT 1421 29 100.0 32 ............................. GCTGCGCTTGGCCTGCAATATATCGGTACACA 1360 29 100.0 32 ............................. TCGATCGGCAGGTGGCCGAGCGCAGCGAGAAA 1299 29 100.0 32 ............................. ATTTCAGTGTCTTCGTCCGTCAGCGCACCTTC 1238 29 93.1 0 .....................G......A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTACATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29744-29105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISE01000006.1 Cronobacter sakazakii strain CS-44 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29743 29 100.0 32 ............................. CTGGTCAAAGCCGCACAAAAATCCCATGTCGA 29682 29 100.0 32 ............................. GCTGCAATGCCGGTCAGGGTCAGCAGTTCCTG 29621 29 100.0 32 ............................. CCTCCTCATGCGAGCGGGCGCTGGTCATCAGC 29560 29 100.0 32 ............................. AAGGCGTTTACGGCTTGTTGGGCTTGTTTAAT 29499 29 100.0 32 ............................. GTGTTAACTCAAATTCATCGTCCCACGGTGGG 29438 29 100.0 32 ............................. ACCCGCCAGGCTGATGAACTCGCAGACCGGCA 29377 29 100.0 32 ............................. TCGGAATCCTATGGTCAGCCTGTGATGTACAA 29316 29 96.6 32 ...........................T. TTTGCCACCACAATAATCATTCCAGTTCTCAT 29255 29 96.6 32 .........A................... TCTTCCAGGAGATCGATCCCTTGTCTCAGAGC 29194 29 93.1 32 AT........................... TACGGCGCTTGCAGCTCTTGCGATCATTATGG 29133 29 86.2 0 .T...................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : ACGCCACCTGATTCACGGCGCTGATGTGAAATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //