Array 1 38-1640 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWD01000003.1 Clostridium perfringens strain NCTC8449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 38 29 100.0 37 ............................. TTTTCTGAATATTGCCATATAGCACAATCTCTATTAA 104 29 100.0 37 ............................. GTTGGATAATGCAATTGATGAAATGAGAAGATACAAT 170 29 100.0 37 ............................. TACAATACACTACTAACTACATTAACCATTCTAACAA 236 29 100.0 37 ............................. CTTTAGAAATAGAAGAACCTACTGCAATAGACAATAC 302 29 100.0 38 ............................. ATATTTTACATTTATATATAATTTCAGAATCAGAGCAG 369 29 100.0 37 ............................. GTTTCTGAAGCATTTAACAAAGCTGTAAATGATGAAA 435 29 100.0 37 ............................. TTTTTATTAATCTTATATAATAACTTTTTGCCAATTT 501 29 100.0 36 ............................. CGAGTAGTTATATGGGAAAATGTTAAAAATGTTCTT 566 29 100.0 36 ............................. TATGAAAAGCGTTAAGGCTGATACAAAGCCTACAGT 631 29 100.0 37 ............................. TTAATATCACACCCCATTAAAATTATACATTTATTTA 697 29 100.0 36 ............................. TTGTAATAAACTTTTGGATTTACAACAACAAATTTC 762 29 100.0 36 ............................. GAATTTGAAGTGGTGGACGAAGTGGATGAAAGCAAT 827 29 100.0 36 ............................. AAAATAGTTAATAAAGTTGTTAAATGTAATGGTTCA 892 29 100.0 37 ............................. ACTTCATATGGAAGGCTTATGGTATTAGGTTGGGACA 958 29 100.0 36 ............................. TCAGGATTAGTACATACTCCTGCACCATTGAAGTCA 1023 29 100.0 36 ............................. ACACTTTCTAATATGTCATTAGTTTCACACCCTGCA 1088 29 100.0 37 ............................. TTACATGGAGGAATGTCTATAGGCGTAATAGAAAGAG 1154 29 100.0 37 ............................. GGTGATAATTTTTTTATAGATGAATTTAAGTCTTTAG 1220 29 96.6 37 ...................A......... TTGGTTGGTGTTGCTGAAGAAGAAGTTGTTTCTATTA 1286 29 100.0 35 ............................. TTTACAGTTTCGTTTTAGGTGAGAGAGGTAACGGT 1350 29 100.0 37 ............................. TACTCATTAAGGTAAGCCATTATAGCTATCTTATTTG 1416 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 1481 29 96.6 36 ................A............ ATTTTTTGCTCTAACCCTTGCCTTCCCATTTGAGCG 1546 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1612 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 98.5 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : TATTCCCCAGTGCATTTTCTTTTTTTCGAATGTATTTG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 82993-89174 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWD01000006.1 Clostridium perfringens strain NCTC8449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 82993 29 100.0 37 ............................. TAAGATGTTGTAATCTCACGACGTTTAATACATACGC 83059 29 100.0 36 ............................. AGTTATAGACTTTTTTGCTAATACGGTACCTACATG 83124 29 100.0 37 ............................. GTTGGTAAAGTTATTTTAGTTATAGGATTAGTCGTGG 83190 29 100.0 37 ............................. ATTATAAAGTAACATTTACAGATCAAGAGAATAATCT 83256 29 100.0 37 ............................. TTTTAAAACGATTAACTGCTAATGTAAACTTAGCTAC 83322 29 100.0 36 ............................. GAGAATTTTGTAAATTGAGTATTATTTTCTTCACAC 83387 29 100.0 38 ............................. AAGGACTATGTTTAATGTAAAAATTCTAAGCATAGTTG 83454 29 100.0 36 ............................. AGCTTATTGTGATTGGTGTTTTAATGAAGGCGAATC 83519 29 100.0 37 ............................. AATATTAACCATTGCCAGTTAATCGAGAATTCTTTAC 83585 29 100.0 37 ............................. TTCATTCATTGCTATAAATCCATTATCTTTTACAAAA 83651 29 100.0 37 ............................. TGCACTCTTTAAGTGCATTTTGGATTAAATCCTGTTC 83717 29 100.0 36 ............................. TACTTTTTTTATATTACAAATTGTATTCTTCTTAAT 83782 29 100.0 36 ............................. TGTGCATATAGTCTGCTCTGTAACATTATATTTAAT 83847 29 100.0 37 ............................. TACAAAAATATGAGTGAACAATTATATAGAATCTATG 83913 29 100.0 36 ............................. GACTTTATGGGATATAGCAAAAAGTATATTAAGCTT 83978 29 100.0 38 ............................. TGATAGGATGTTAGCAGCAGCCGATAAATTCAATGTGC 84045 29 100.0 36 ............................. AAAGAACAAGCTTAGAAAGGAGAGTGAACTATGAAT 84110 29 100.0 36 ............................. ATTTTTATTATTAAAAGCATTAAAAAAGGAAGGTTA 84175 29 100.0 37 ............................. TAGTTTTTATAATTACATCTTCATAATCATCTGTACC 84241 29 100.0 36 ............................. TCATGTAGTTTATTCTACTTGGAAAGGTAGAAATAC 84306 29 100.0 37 ............................. TCATTAATTAAATATCTACTTTCTTTAGTTTCAACTA 84372 29 100.0 36 ............................. TTTTTCTTATAGGTTATCTTTGCAACCTCGAATTTA 84437 29 100.0 36 ............................. TTTGATGATGCTGAAGAAATTAAATATGAATTAGTA 84502 29 100.0 37 ............................. AGCCTTTTTTTATTTACAATAATGTTATATAATGTTA 84568 29 100.0 36 ............................. AAAACTATCATGTTTCCCACAACTAGGGCATACAAC 84633 29 100.0 36 ............................. GCTTTAAAGAGTTCAACATTTGTAATAGATGTTATT 84698 29 100.0 37 ............................. AAAACCTTTTCTATCGAACTTATCATTCATGCTAATC 84764 29 100.0 37 ............................. TTTTTTATAGTAACGGTTTTATATATAGCAGCTAAGA 84830 29 100.0 36 ............................. AACTGTTTATGGGATGAAGATTTTGAAGAAGAAAGA 84895 29 100.0 37 ............................. GATGCTTTAGTCTTAGCAGAGTATGAGGGTGTAAAGG 84961 29 100.0 36 ............................. CACTAATCACTCCTTTTATAAATTGATTATAACGTA 85026 29 100.0 37 ............................. ATTTCAGTTTGTTTAGTATTTTTATTAAACTTAGCGT 85092 29 100.0 36 ............................. TAATTTCAAGAAAAGTTAACGACTTTGTCGTAAAAT 85157 29 100.0 36 ............................. TTAAACTTTTAATAAAATCAATAAAATCTAAAATTA 85222 29 100.0 36 ............................. ACTAATATATTGTGAAACCCAATTTCAGTTTGTTTA 85287 29 100.0 37 ............................. GAGGATTTTTTAGATGATGAAGAAGTTTCAATTACTC 85353 29 100.0 37 ............................. AAGGAGTAAAGTATTATAATGTGAATAATGCAAATAT 85419 29 100.0 36 ............................. ATATCTGACGAACTGTTAACCATTGTACGTGGTGTG 85484 29 100.0 37 ............................. ACATCTTCAATAGTTTCTTACGAAGCAGAGTTTTCTT 85550 29 100.0 36 ............................. TAGTTAATCTATGTGCTTCTTTCATTAACGAACTCA 85615 29 100.0 37 ............................. AACGTTAATGTTACAAGTAATACTACAGTAGCTAAGT 85681 29 100.0 36 ............................. TAGAGAAAATAATGTGGTTTTATGGTGGTGGAAGGG 85746 29 100.0 37 ............................. TTTACCTTCAATAAATAAAGTTTCTTCACTAGCCATC 85812 29 100.0 36 ............................. TTAAATTTTAGGTTATTAAACTCAATATACTTTTCA 85877 29 100.0 36 ............................. AGCTCAACAACTATTCACTAAAGAATGTGCTCTTTG 85942 29 100.0 36 ............................. TTATCTTCATAAAGAACATCATTTTCTCGAAGTGGT 86007 29 100.0 37 ............................. TAAGAACAGTTTATTGAGAAGTTAGGCGTTATTTCTA 86073 29 100.0 37 ............................. TCTTTTAATCTCTCTATATTTAGTTTTAATCATTTTT 86139 29 100.0 37 ............................. TTAAAGTCAAAACCTTTTGCAATTATTAGCTATAAAG 86205 29 100.0 37 ............................. GATCCTCATCAGTATAATTTTTCATATTTTCTAATTT 86271 29 100.0 36 ............................. TCTTTAAATGCTATAGAATCTGAAGAAATAGAAATT 86336 29 100.0 37 ............................. AAAATCTTTTATATTATTTATTCTTTCATCATCTGTG 86402 29 100.0 36 ............................. GCGACTTCTCTCACAGTCTCACATATTTTAGCAGGT 86467 29 100.0 37 ............................. AGGTAAGGTTACGGCTGATGTTTATAATAAAGCTATA 86533 29 100.0 36 ............................. AAGAAAAATTTATTGAAAGCTAATTCATATAATTCA 86598 29 100.0 36 ............................. ATGTCTAATCCTAAAATCATGTTAAACACTCCTTAA 86663 29 100.0 37 ............................. AACTTTAAAGCAAAATATTGCTTCTTCTTCTGTAAAA 86729 29 100.0 37 ............................. GATAAATAAATTTAATAATCATGCTTGTGGCTGGGGT 86795 29 100.0 36 ............................. CATAGATCGAATTGTTACCACCTTTATTATTCTTTC 86860 29 100.0 36 ............................. ACTTTAAAAGAAACTATAAAAAAATAGGAAATGAAA 86925 29 100.0 37 ............................. AACACTTACCTTACATAGCCTTATACACTCTTATAAC 86991 29 100.0 37 ............................. GCATTAGCCCCCAGCTCACTGTCTAATAAATCTTTTA 87057 29 100.0 37 ............................. CTATAGTAATCTAGGAATTGAAGTGGTAATTTATACT 87123 29 100.0 36 ............................. GTTAATATATTCATCATACATAGCTGAACCAGTACA 87188 29 100.0 36 ............................. AAATTAATTTATGTATATTTTTATGTACTATTATGT 87253 29 100.0 37 ............................. ATTAACTAAAATAGGTGATATGGGTTCAGCGTTTGGT 87319 29 100.0 35 ............................. TCACTTATAGATATAAATAAAAACGTTGCAATGGC 87383 29 100.0 36 ............................. TAAGAATGCAGACTATAGAAAAAATAATATTGTTGC 87448 29 100.0 36 ............................. AGCAACAAGAGTTAGGTATAAAAAGAATATTATTCA 87513 29 100.0 36 ............................. TCAAAAAGCTTTCTACATTCTTCTCTTAATGCATTG 87578 29 100.0 36 ............................. GGTAGAATTTGGACTTGGCTAAGTGATACTGTTTCT 87643 29 100.0 37 ............................. ATACATATATTTGATGCTTTTGTAGACTTATGCTACA 87709 29 100.0 37 ............................. TCTTAATGGAAAAGGAGAAAATGAGATGGTTGAGTTA 87775 29 100.0 36 ............................. AAATTATAGAAAGGATAGCGATATGAATGTAGATAT 87840 29 100.0 36 ............................. GCGACTTCTCTCACAGTCTCACATATTTTAGCAGGT 87905 29 100.0 36 ............................. TATGAATGGAGAACTGTATAATTCTCTTCCTATTCC 87970 29 100.0 36 ............................. AAGTCGAATGAAAAATGAATTATATAGTTTTCCATG 88035 29 100.0 37 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAGGT 88101 29 100.0 36 ............................. TTGATGAACCTAAGAGAGTTGAAAAAAATAATAAAA 88166 29 100.0 36 ............................. TTTGTATTTCTAGCTCTCCAACCTATTGCAACTTCT 88231 29 100.0 37 ............................. GGTTGTGAAGCTATATTGGAATACGGGAATATAGATA 88297 29 100.0 36 ............................. TTGTTTAAGAAATAACTAAGTCCATAGTTCCAAGCA 88362 29 100.0 35 ............................. GCTTGCAATTTTAGGAGAAGGAGATTTTCTAGAAC 88426 29 100.0 36 ............................. TTACAAGAAATTTTTCTAATAGTGTATATATACATT 88491 29 100.0 36 ............................. TTGTAAGTTTGGCGTATATAGTCATTTTCAATTAGA 88556 29 100.0 36 ............................. GCTTTGGTTTTAATATTTAATACACTGCATAATTCT 88621 29 100.0 36 ............................. CTTAAAATGGCATTATTACTATATTTATTATATATA 88686 29 100.0 36 ............................. TTTATAATAAGTTTAAACAAATATTTAAACTTATTA 88751 29 100.0 37 ............................. CGCATTTGTAGAATATTCAGTGTATATTTCATCTTTA 88817 29 100.0 37 ............................. TTAAAAATGTTACACCACGGTATGTTAGGCTTTGGGG 88883 29 100.0 36 ............................. GGAAATACCGATTTAGTTCCACACGAATTTAATACA 88948 29 100.0 37 ............................. ATTGTAGCCTTTGGAGGTTTAGCCTATTATGGAGGTA 89014 29 100.0 37 ............................. TTACATGACAAAGGTACGTCAACAAAGAAGTAAAGAA 89080 29 100.0 37 ............................. TAACTTTGGATAACGCTCTCTATATTGTTTTAACTGA 89146 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 95 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGGAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TAAATGTTGCACTATAAAATATCGTGGTTAAAGGAGAGTTTTATATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //