Array 1 22489-22094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOMP01000033.1 Acetobacter indonesiensis strain DmW_046 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22488 29 100.0 32 ............................. CCGCCCCTGCCGTCAAATAGTGAAACCGGCGC 22427 29 100.0 32 ............................. CGGCTGGCAATGATTAGTGTGAAAGGCTACCC 22366 29 100.0 32 ............................. GGGTTGCGGATAGGCAGAAAATCCTGAGCCAT 22305 29 100.0 32 ............................. TTGCCCTCGCAGCAGCAGACGCGGCGGCTTGG 22244 29 100.0 32 ............................. TGAGCGTTTTCATTCAGACCAATCCGCATAAA 22183 29 100.0 32 ............................. GAACAGCATTGCGCCGTCTTTCGTCCGTTTGA 22122 29 86.2 0 .......................A..GAA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : CGTCGCTACTGCTCATCCCGATAAGGGAGATCTGGGCGTTGTGCGCGGTGCGGGAATCAAAATATCCACACCCGGTTAATCCGATTACGGGCAGCAGCAGGGCAAAAGCCAGTTTCTGTCTTTGTGCGCCACGGCGTACAGAAACACGAAGCACCACAGAAGCAGCACGGGTCACAAAAGGAGCTGTCATGGAGGGCAGGGAAATCCGATTATAAAGAAAGAACACCACAGAAAATACAGAACTGCATAACACAGCCAGCCTGACAGCCGGTATGCCCAGCCACCGCCCGGTGTTTATCTAACCACGAGTGTAGCATTTTATACCGATAAGGGAATGTCACAGCCACAAAAAGCCTCAGCGCATGTGCTGCCAAGCTCCGATTTTTAACGGATGCGCCCTCTTTCCCCATACGGCGGAAAAGGCTAAAAAAGAGCACAGAAATGCTGGTAGACTCTTTGACAACAAAATAACCTTGTAAAATCAAACTCTTCCAGGAAGA # Right flank : ACCCAGCTAGTATGTGTGGGCTCTTGCTGGTGGGGCGTATCTGCCGCACTCTATGGGCACTTTTTGTGTGTAAGGAGCGTGTTATGGTGGCATTTCGTCCAGTTTTTAAGGCTGTGGCTTCTCTTGCTTTTATGGGAGGAATCACATTGGCGGTTTCTCCAATGTCACAGCAGGCGCTTGCGGCAACAATTCTGAAAGTGCCGGCTGTGCCTGCCCCCATGACTGCCGGCACCGCTGCTCCGGGTGTGCTGGATTATGACGGTATCCCGACAGTTGAGCACGCATCCGCTGCCAATGTGGCTGGCCTTATGTCATACTGCTACAGCCATAAACTGGTGACAGATACGACTGTGCGTTCATTAGGGCGTAAGCTGGCCAGTCGCGAAGGCGTAAGCACTAATCCGGCTTATGCGTGGGGTGGCGTAGGGCGTCTGGAACTGGGTGGCCAGACCATGTTTGATGTAGGTAGCCTGAATCGAGATCAGCGTGCCGCTGTTTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34853-34153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOMP01000033.1 Acetobacter indonesiensis strain DmW_046 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34852 29 100.0 32 ............................. ATCTCGCTCATGTCGTTATTCGACCGACCAAA 34791 29 100.0 32 ............................. GTTGTCAGTGGGGTTTCCCAAGGCAGGCTCCC 34730 29 100.0 32 ............................. CCGCTTCCATTTTTCTTCGGCCCGGTCTCTTA 34669 29 100.0 32 ............................. AGCGCGGAAAATAAGAGTTTTCCACCTGTTAA 34608 29 100.0 32 ............................. ATCCGCCAGGCTCCGCGATAGCCGATCCAGCC 34547 29 100.0 32 ............................. GGACTAGAATAAAACCAACAATCGCAATGAAT 34486 29 100.0 32 ............................. GACGAGAAAGAGCCGAAAGAAACCGATCCGAC 34425 29 96.6 32 ..............C.............. GCAATACCGTTAGGATTGTTGGGAGATGGATC 34364 29 96.6 32 ..............C.............. ACCTGCGGGTCGTCGCTGGAAATGCCGCCCTT 34303 29 93.1 32 ........T.....C.............. TTGCGGAGCAGCGCAAAGGACTGGCCTGCACA 34242 29 96.6 32 ........T.................... ATGGGGGGGAAGCCCCTTGCCTGTAGTGAGGA 34181 29 79.3 0 ............G....A.....A..GTT | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : AACGCACCAAGAGCAATAATCAGCCCGCTATCGCCAAGTAGTTTACCCGCCCCAGCCTGAAACGCTGTCAGCGCACGGGCAGGTGCCAACCCTACGGAGGCACTGAAGACAAGCGCCCCAATCAAAATTCCCAGAAATGGCGGAAACTTTGCCACGCTAATGGCAAGGATAATCACCAGCAACGCAAAAGCACATGACAGGACTAACCCTGTATCGTGCGTCTCCCAGACAACAAGAGAATGCAAGCCCGTAGCCCCTTATGTTCTTCTTTTTGGGCTATCTCACCCCATCTTGCGGGCTGAATACACATCAGGAATGCGTGATGTGTGACGTCGGGCGTATTACCGTGGCCTTTGCTTGCAGCAGCATACCTCATGGTGCGTTAAGGCTGCCCCACGGCCTCTTTCGCGAGCGTAAAAAACGAGCTAAAAAAGACGTCAAAGTTTGGTAGATTCTTTGACAACAAAATAACCCTGTAAAATCAAAATCTTCCAGGAAGT # Right flank : AAGTTATTCTTGAGAGTCTGGAAGTCAGTTTACAGGGTTATGCGCTTTAGAAGACCGTATTGATGGCAAATTGAGGGGCTATTTTTATGCTGGTGTTATGGCCTGCATAATAAAGGGATGCCCCGGCAATAATGCCCCAGTTGGCGTTCCAGTTATATTCAAATGCGGGGGCTACCTGCCAGTCGCCTGACGGTGCGCCGGTGCGGTCTGTATAGGTTCCTGCTTTTGTGTGGCCCCACACGCGGGACCCATTGGCCCAGTCGCGCGCGACGTCAATTGCCAGAAGCCATTGGCGGTTAATCCCGTATTCAAGTGAAAATCCGGTTTGTCCGCTCATGCCCGGGCGGCCTTTGCCGCGAAAGCCTGTTGTGGTGCCATAGGTGGAGGTATCGCGCACGTCTGCTGCGTTCAGCGCGCGTCTGAACCAGTTCCAGGCGCGCAACCTCAGGTTGTGGTTGCCGGGTAGTTTGTAGGTTGACTGGCTCATTAACGCCGTGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //