Array 1 10617-9527 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUOY01000021.1 Bacillus cereus strain AFS031287 AFS031287_99_B5_Contig18_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10616 32 96.9 34 .....................G.......... CTATTTAAATCATTAGTTTTACAAATTATTGGAA 10550 32 93.8 36 .................C...G.......... TCGGTTATTATTAAATCGCCAAACGTTAGCGCTATG 10483 32 90.6 35 ............A.T......G.......... AACATTATAGAAATGATTGAGCGAGAGCTAGGAGA 10416 32 100.0 32 ................................ AACTTACGAAATCAACGTAGATTTAATAAAAG 10350 32 90.6 31 ..........C......C...G.......... AATATGCGTGAACTTCAATCATCGCTTTTTT 10285 32 93.8 33 ............T........G.......... AGCATTCGTGCAGGCAAAGTAGCACGTGCTTAT 10220 32 90.6 35 ............A.T......G.......... AGCTTTCTGAATTGTTGGAAATGAACAAGGTGTAT 10153 32 93.8 34 ...........CA................... CACATTAAGAATTTAGGAACGAATATTGTAAAGC 10087 32 93.8 34 .................G...G.......... GATGTAATTGCAGGGATTGGAATGCTGATTGGTA 10021 32 96.9 34 ............T................... GTTAAGACAAGCGGATTTAGCTCATGAACTAAAT 9955 32 100.0 33 ................................ ATTTGAGCTAGTGGTAAGCGCATCATTGGTAGT 9890 32 90.6 35 ..............G......G.....A.... TATAGTACTTGTAGTTTGCGAATACTGTTTTTGCT 9823 32 90.6 34 ..........C......G...G.......... AAGATTTACACGTAACTGAAAAGCTTGATTATGT 9757 32 93.8 35 ............T..............T.... TGTCAATGTTAGGGAAAGGAAGCATGCTAAAAACG 9691 32 93.8 36 ..T.........A................... ATGATAAGATAGGCTTTTATGTACCTTTGTATTAAA 9623 32 93.8 33 ............A........G.......... ATCGAACACCAGAAGGAATCCAACGAGATAGAA 9558 32 87.5 0 ...........C.......T.C.........C | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 93.6 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : CCCTAGATTGTCGCACCTCTTGTGGGTGCGGGGATTGAAATACCTCTAGATAGGATTTTGTAGTAATAGTTTGTCGTCGCACCTCTTATTGGTGCGTGGATTGAAATAGTTTTAAGCCTTGTGTATCCGCCACGCTCTCCAGTCGCACCTCTTATAGGGGCGGGGATTGAAATTTCCATATGGCTATATTGACAATCTTCGCGCTCTTGTCGCACCCCTTATAGGGGTGTGGATTGAAATTCAACTTTCCTGCTATAACTCTTTTCCATGCGAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTTGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATATTTTTGAACAAAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGT # Right flank : CTTTTTGAGATACTTACTGCTTGATATATAATATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCAAATTTTCTCGACGTTTATTCAAATAAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAATTTTTTTATCATATCCTTTGCAACAAGTTGCCATTAGGATAGTGTATCAGCAACTTGTAGCTATTACTATGAATGCTATATTACGCAAAATTATTACAGTTTTTTAGTTTTCTATTTTTATTATATGCTCTATTTTTACATTTATTCTTTATTTCGAAGTTTGAAAAATAGAAGTTTTGGACAAATTATAACTAAAAAACAAATGAGGTGTAATATATGCCCTGGTTTAAAAAACCCCGTTCAAAACTTGGAAAATTCATAGATAAACACGATTTAAAACAAGTAGATATTGCTAAGATTAGTGGACTAAGAGAGTCAACTGTTAGTCGTTTAGCAAATATAGACAGTGTTT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12496-10877 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUOY01000021.1 Bacillus cereus strain AFS031287 AFS031287_99_B5_Contig18_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12495 32 100.0 35 ................................ AGCAGTCATGTCAGCATCTTGGATACGGCTACGAG 12428 32 93.8 34 ...T.................G.......... CACTTACAACCGATGGGAAAGGATATGCGGTTGT 12362 32 84.4 35 .........A.A.GA......G.......... ACAGATGAACACATAGAGCAACTATTCAAAGCAGG 12295 32 93.8 33 ............G........G.......... CATGATAGTAGAACCATGTAAGTTGATTGCACC 12230 32 84.4 35 .......T...CG.A....T............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 12163 32 90.6 34 ..........C.T.A................. CTCCTTATTTACTTAGAAGAAACGACCGTGTTAT 12097 32 100.0 35 ................................ AATCTCAATCGCTTGTGATACTTCGGGAATACGGA 12030 32 84.4 33 A........A.A.GA................. ATGATTAAGAACGTACCGATCGCTCGTGCTCAG 11965 32 93.8 34 ............G........G.......... GATACATTAGAAACCATACAGGCTCCGTTTTTAT 11899 32 87.5 35 ............G.A..G...G.......... AATAAGTAACCCTGCATTCACTTCACTATTAGCAT 11832 32 100.0 33 ................................ CACTTTCCTTTCTCGTATACGTGATACCAAAAA 11767 32 87.5 35 ..........C.T.A......G.......... ACCAGGAATAGTTGTAGTAATTAGTAAGCGGGAAC 11700 32 81.2 35 .......T...CG.A...TT............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 11633 32 87.5 33 ........A...G.A..G.............. TTTGATAACAACATATGTAAAACATAAGTAAAT 11568 32 84.4 34 ....T.......G.G..G...G.......... GCATCGTAGAATGAAATTGTTAATCACGATTTTT 11502 32 96.9 34 .....................G.......... GCATCGTAGAATGAAATTGTTAATCACGATTTTT 11436 32 96.9 33 .....................G.......... GTGGATGGATTACAACAGAAGGTGGGAACGCTG 11371 32 90.6 33 ............G.A......G.......... TAATTTCGAGTATGATTAAGATACTTTAATTGA 11306 32 93.8 35 ..............A....T............ AACAAAAGAAATAAGAACGAATTAAGAGGTAAAGA 11239 32 93.8 34 ..............A....T............ CAGTGTTGTTACGCTCAGTTGAAATCCCTAGATT 11173 32 100.0 34 ................................ TAGTGTTGTTACGCTCAGTTGAAATCCCTAGATT 11107 32 90.6 34 ............G.G......G.......... ACCTCTAGATAGGATTTTGTAGTAATAGTTTGTC 11041 32 100.0 34 ................................ AGTTTTAAGCCTTGTGTATCCGCCACGCTCTCCA 10975 32 90.6 35 ..............A..G...G.......... TTCCATATGGCTATATTGACAATCTTCGCGCTCTT 10908 32 87.5 0 ........C.....A..G.T............ | ========== ====== ====== ====== ================================ =================================== ================== 25 32 91.8 34 GTCGCACCTCTTATTGGTGCGTGGATTGAAAT # Left flank : CCTATGTTTTTTATGGCAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGGAGATGCGGAAAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCGTCAGCAGCACGTCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGTCAGTACTCTTCTGCAAAAGTACACCGTTTACTGGACATTAAGCGGAATATTGACGAACCAAAAACAATTGATGACTATACCATCTTAGTACATGAATTAGATGGTTTAAAAGTTGCGATTATTGATGGACTATAATGAAGAATTAGGTGCGAACGTATAGCACACATGAAATTTCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCTTTATTAAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTTTATGATTTTGAACACAAATCGGT # Right flank : TCAACTTTCCTGCTATAACTCTTTTCCATGCGAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTTGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATATTTTTGAACAAAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGTGTCGCACCTCTTGTAGGTGCGGGGATTGAAATCTATTTAAATCATTAGTTTTACAAATTATTGGAAGTCGCACCTCTTGTAGGCGCGGGGATTGAAATCGGTTATTATTAAATCGCCAAACGTTAGCGCTATGGTCGCACCTCTTATTGGTGCGGGGATTGAAATAACATTATAGAAATGATTGAGCGAGAGCTAGGAGAGTCGCACCTCTTGTAGGTGCGTGGATTGAAATAAAACTTA # Questionable array : NO Score: 8.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //