Array 1 3024307-3028245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059040.1 Acinetobacter baumannii strain ATCC 19606 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 3024307 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 3024367 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 3024427 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 3024487 29 100.0 31 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAAT 3024547 29 100.0 31 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTTT 3024607 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 3024667 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 3024727 29 96.6 31 ............................G GTACAAGCCATCACATGTATCTGCTAGTTCA 3024787 29 100.0 23 ............................. ACACATGCCAGATGGTTCAAATG Deletion [3024839] 3024839 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 3024899 29 100.0 31 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAGG 3024959 29 96.6 31 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACAA 3025019 29 100.0 31 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTAT 3025079 29 100.0 31 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGGA 3025139 29 100.0 31 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCCC 3025199 29 96.6 31 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAAT 3025259 29 96.6 31 ............................T ACCACCCATTGAACGTTAGCCATATGAGCAA 3025319 29 96.6 31 ............................T TCCATGCTTCACATAGAAATTCATTGCAAGT 3025379 29 96.6 31 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTTA 3025439 29 100.0 31 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTGA 3025499 29 100.0 31 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTTT 3025559 29 96.6 31 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTTT 3025619 29 96.6 31 ............................C AATACAAACATTTGACTGCACATCTGGAACA 3025679 29 96.6 31 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAAT 3025739 29 100.0 31 ............................. GAAACATCTGTTATTTTTATTGATGAGGTAC 3025799 29 100.0 31 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTGC 3025859 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 3025919 29 100.0 31 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAAG 3025979 29 96.6 31 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGATT 3026039 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 3026099 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 3026159 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 3026219 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 3026279 29 93.1 31 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAAT 3026339 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 3026399 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 3026459 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 3026519 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 3026579 29 96.6 31 ............................T AGATAATGTTGAATGGGTTGAAACTACCTAC 3026639 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 3026699 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 3026759 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 3026819 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 3026879 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 3026939 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 3026999 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 3027059 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 3027118 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 3027178 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 3027238 29 82.8 31 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC 3027298 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 3027358 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 3027418 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 3027478 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 3027538 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 3027598 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 3027658 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 3027718 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 3027778 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 3027857 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [3027880] 3027917 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 3027977 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 3028037 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 3028097 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 3028157 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 3028217 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 66 29 94.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-77] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //