Array 1 772700-774101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUK010000001.1 Campylobacter concisus isolate 2010-33561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 772700 30 100.0 37 .............................. GGTGTATTCTCGCCAAACCTGGATCGAGTAGAATTAA 772767 30 100.0 35 .............................. CCAAAATCAAGAACGCAAGAAGTAAAAAAATAAAA 772832 30 100.0 37 .............................. ACAAGAACTTGAGCAACACCAACACGATCAGAAAAAT 772899 30 100.0 36 .............................. TCTAAAAAGCTCTTTATCGCATTTAACCTTTGTTGC 772965 30 100.0 35 .............................. GAGACCATAAAAGAGCGTTTAGAAAATGGCTTTAA 773030 30 100.0 36 .............................. GTGCGTCATAAAGTATCACTCTTGATCCTGCAACTT 773096 30 100.0 36 .............................. CTAGGCAATTCAGTATCAAAAAGGTCTTTAAAATTT 773162 30 100.0 33 .............................. TTTGCTTCAGCTTCAAGATCGTCAATATTACTT 773225 30 100.0 36 .............................. AAGAAAAATCATATCTAGAAGCATTGAGACGAGCCA 773291 30 100.0 36 .............................. TCTTTGGCTATATGTTGCCACAAACAAAACGCAATA 773357 30 100.0 33 .............................. TTCGGCTTGAAAAGTAGCCGATACGGTTTCTAT 773420 30 100.0 35 .............................. CGAGTATAGAAGTAACTACTGAAAGCGACCTTTAC 773485 30 100.0 34 .............................. CTATGCTTTCAACGCTACAATTCCTTAGCCCATA 773549 30 100.0 36 .............................. AGGCGATATTAGCGGGTGCGATAAAAAGGATCGGGG 773615 30 100.0 35 .............................. AAACTCATTGCAAACCAAAAATCTATCTACAAAAC 773680 30 100.0 35 .............................. CAGCAACAAGAGAACCAGGAGCTAAAGAAGCGAAG 773745 30 100.0 38 .............................. GATTTTAATCGTATGTTATTAGCTAGAATAATGCGAGA 773813 30 100.0 34 .............................. TGCAGCCAGACGACAAGGCATTTTTAAAGAGCGT 773877 30 100.0 35 .............................. TACTCAGCGTCGCTAAATTTTATCTCGCAGATAGT 773942 30 100.0 37 .............................. TAGGTAGCTATATCACTTCTAAGAGTTGAAGGGCTTA 774009 30 96.7 33 ................C............. TTACCGATAATGAGTGCGTGGCGTATATAGTTT 774072 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.8 35 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATTGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGTAGGATAAAATTTAGCAACGACGCAGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACACTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CTCGCCGAGCATGATTGGCACCAACCGTAATCACTCTTTTGATAGTCGTTTTTCCGGAGCAGTTCCATACAAATTTTTAGTTGGTAAAGTTAGGTGGCAGATATTTTGACATAAATCAGCAAAATGCCTTGGCTAAAATTCTGGTAAGATCAAAATGAAACAAATTATTATATCAATGAAATTTTGAAGAATGTTGTGAAATTTTTATCAATTATAATTAAAATAAATTTACAAAAACCCGCTTGTAAAAACAAGCAGGTTTTTAAATATTTTATTTCTCTAGTTTATCTTTTTTAGATTTAGCTTTTGAAACGACTTTTTCTTTCTTATCTTTTACCTTGTCAGCAACTTTATCTTTTTCATCTTTTGCTTTTTCACTCATACTAGTTTCATCTTCTTTACTAGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTGCCTCATCCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 19623-20356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUK010000007.1 Campylobacter concisus isolate 2010-33561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 19623 37 100.0 39 ..................................... GGTTGACCCACCTTTAAGTGTTCTTACAGAGCCTACACA 19699 37 94.6 41 ..TA................................. GAATTGAGCTATCCTTTCTATTTTTATTTTTTTATTTTTGC C [19714] 19778 37 100.0 46 ..................................... ATAAAGGTCTTCTATATTGATGTTTTGTGCAAAGAGAGCTGTCTTC 19861 37 94.6 44 ..TA................................. TGCCGCCTCAGCTTCTGCTTCGGCTTTTGACTCTATAGAGTCTA 19942 37 94.6 41 ..............C.................A.... AGCTTCATGAAGCTCAGCCTTAAACACACGCTGCGAGTAGT 20020 37 100.0 40 ..................................... GTTTTCTAGTGTGTTTTGTGGTTCTATTTGCATTTTTAAC 20097 37 91.9 39 ..TA.............T................... TTCGTCATTGAGGCGTCAAATACTTTTCCGTCCATATTA 20173 37 100.0 39 ..................................... ATCTCTTTGATAGTCTCTAGCATACTAGGATATAGGCTA 20249 37 100.0 34 ..................................... ATAATTCTACTTACCATTTGTTCCATATTGCTCT 20320 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 10 37 97.3 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CCAGCAGTTCATCATCGGTAAGCTAAAAAACCAGATCAACTACCTAAAATACCTAGACAAATACCACAAAAGCCTAAGCTCCCACATCAGCTCCATGCAAGAGATACTAACCTCCCACGTCCCAAACGCCCAAAGCGTAAGCGAGCTTCTAGGCTTCGAAGGTAGCAGCACAAAGATCATCGACCCTAAAACTGACAAAGTGCTATTTTACCGCATCTGCAAGAGCTGTATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGTGCCTTTTTTAGGGATTTGATTTTCGAACTTTTTAGCTTTCATAAATGCTCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : CAGGTAGGTATATCTAGCATAGTTCTCAATCATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGCTGTTATATAAAAAAATAATCGTCATATTGACCGTATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGTTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTATTGATATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGCAAATATGGCTTGGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGTGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAACTATCTGAAAAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //