Array 1 8936-11867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUO010000017.1 Micromonospora sp. MMS20-R2-29 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8936 37 100.0 39 ..................................... CGGAGTTGGGGCAGGCCGCGCGGCAAGGTGATGCCGGAG 9012 37 100.0 38 ..................................... ACAGTGCAGCAGCCGGAGATCGGGCTCACCCTCTGCAG 9087 37 100.0 40 ..................................... ATCGTCTCGCGCGGTGGCGACATCGCGCAGATGGTCGACA 9164 37 100.0 36 ..................................... TGGGCTAGCAGCGAACGCCTCGAAGCCGACTACCGC 9237 37 100.0 39 ..................................... CGCGCCGGCCTCGTGACCTGCGGTGGGAGCAAAATTTGC 9313 37 100.0 38 ..................................... TGGGCTAGCAGCGAACGCCTCGAAGCCGACTACCGCGC 9388 37 100.0 35 ..................................... TACGCACCACGAGAAGGGCCTGAAACTACCCCCGG 9460 37 100.0 37 ..................................... CTGGTGCGGGCGGCGGCGGTGTCGCTCAGGCCGGCGA 9534 37 100.0 38 ..................................... TACCTGCGTGAGCACGTGGCGGGGACGGCGGTGGAGTT 9609 37 100.0 36 ..................................... CTCACCAAGGCCAAGGCCGCCCGCGCCGAACACGAG 9682 37 100.0 37 ..................................... CTGGTGCGGGCGGCGGCGGTGTCGCTCAGGCCGGCGA 9756 37 100.0 37 ..................................... CAGATCGCCAGCTCGACCAGGGCGCTTTTGTGGTCGG 9830 37 100.0 35 ..................................... CGGCGGCGACCCGAGCGCAGAGATCACCTGACTGA 9902 37 100.0 36 ..................................... ATCCGCAACCCCCTCAACCGCGTCTGAGGAGCCCCG 9975 37 100.0 37 ..................................... TGGGGGACCCCGGCGCATCACGTCGGGCTCTACGTCG 10049 37 100.0 37 ..................................... GCTGCCAGGATGCGCTTGCCGCGCCGCTCGCACTCGG 10123 37 100.0 38 ..................................... AACGAGCTGGCCGACGCGGCGTGGGGCCTCAACCGCAG 10198 37 100.0 35 ..................................... GACCACAGCACCCACCACTGCCGGCCGGAGACGTG 10270 37 100.0 38 ..................................... ACGAGCCGGTCGATACGGGCACCCATGACGGGGGACTC 10345 37 100.0 37 ..................................... CGGAACTCTCGTGGCGAAAAATCTTCCGGCGGATATC 10419 37 100.0 38 ..................................... ACCCGCTGGCCCCTCGAGGTCGACCGGGACGAGGCCGA 10494 37 100.0 39 ..................................... CCGAACATGTTGCCCAGCCTGAGCAGCAGGGCATCGACG 10570 37 100.0 37 ..................................... TCATACCACGACGCGTTCGACCCGGATACCTTCACCG 10644 37 100.0 36 ..................................... ACCGCGCTGGCGGCAGCGTTGACTGGGCCGCGCTGG 10717 37 100.0 36 ..................................... CGCTCCACCCCCAGCGCCTTCGCCGCCTTGGGTGGA 10790 37 100.0 38 ..................................... ACCGGGTCGTTGATGCCGAGGATGATCGCGGTCTGCCG 10865 37 100.0 38 ..................................... CCGTTCGTCGCCTGCACCTCGAACGGCGGACCCTACGA 10940 37 100.0 38 ..................................... ACCGGGTCGTTGATGCCGAGGATGATCGCGGTCTGCCG 11015 37 100.0 38 ..................................... CCGTTCGTCGCCTGCACCTCGAACGGCGGACCCTACGA 11090 37 100.0 38 ..................................... GCCGCCGACGAGACGACCGACAACCGGCCGGAGATGGC 11165 37 100.0 38 ..................................... TAGTTCAAGAGCTTCTTGTTTATCCCCCCGATCCGGGG 11240 37 100.0 37 ..................................... GGCGGCAACGCCGTCAACCTCCAGGTCAAGCTCGACG 11314 37 100.0 37 ..................................... CCGCATGTAAGGGGACCGTACGCCCGGGGATCTCCGC 11388 37 100.0 36 ..................................... GCCACGGCGGCCGGCTCGCCCACCAGACGCGTACTC 11461 37 100.0 36 ..................................... GACGTCGAGACCACCGGCGTCGACGTCGAGACCGAC 11534 37 100.0 38 ..................................... GCCGCCACGGACGTCATGCACCCGTTCGTACGGCTCGA 11609 37 100.0 37 ..................................... GCCGTGGTCGAACTGGCGTTGATCGCTTGCGGGTGGG 11683 37 100.0 37 ..................................... TTCGACCCATCGTTGGATCACCGGCTGCCGGTGGCGC 11757 37 100.0 37 ..................................... GGCACGCAGCGGCGGCGGCCGGGTGAGCCGGAGCGAC 11831 37 94.6 0 ..................................GG. | ========== ====== ====== ====== ===================================== ======================================== ================== 40 37 99.9 37 GCTGCGCCCGGTCTACGGACCGGGCGAGGATCGCAAC # Left flank : ACGCCGCACCGCTGGGGTCCCGTTTGGTGACGATCTGGCGACGAGTGTAGACGGTGTCCAGGTCGACGCCGGGGAGGAACTGCTCGCGGGGGACCGTACGGAATGCGTGCGCCACGGCGGCGGAGCGGATGTGGCCGCGCTGTTCGAGCGTGCTGACGAGTTGTTCGCGCAGCGTCGCGGCACTCGACGTTCCCGGTGCGGTGGGGGAAGTGTTCACTGCGTTGACCCTACTGTCGATCTTCGGGGCGTTCGGCTGGTGCCGGCGGTAGGCGAGAAGCCGCCAGTGTCGCGCCGTTGTCCGAGGGTTGAAGGTGCATCATCTCCACTCGCGGCGTCAGCATTAACATACTGAAGGTTGACCAGTAGCTGATCTAGGAACCCCTGGTGGACACGGAAAGGCCGGAGGTTCCGAACCTCGAAATGAGAGTGATTGGGACATACCGGTTTCGCGTCGCCTGGGTGATTCGCTGGCGAGCGTCAATTTCTGCTGGTGGAGAGCT # Right flank : CCTTCCGTACTCACCAGCGCTGCTGGGTACGCACTGGGTGGGGTTCTCGATGTCGAGGGCCAGGTCGAACACTTTTACTGTGGCGACCGCATGCGCGAAAGGAGCCGATGGTGGTCGCCGACAGGGTCAGTGCTCTGTGGTCGGTAACCACTTGGCTCAGGGAACTGTAACGATGATTCTTGGGAGTTGTTTGTGTCTGGTGTGGGTTCTCTGCGGGCGCATAGTCCTGCTACCGGTTCTGGTCGGTGGCATTCGCTTGCGGACCATCTTCGTGGCACTGCGGTGCTGGCGCGACGGTTTGCTGCCCCGTTTGGTGGGGGTGAGGTGGCGTACTGGCTGGGTGCGCTGCATGACGTGGGGAAGGCGTCCTGTGCGTGGCAGGACAAGCTCGCTGTGATCGGGCCCACTGGGGGAGCGGTGGGTATTGATCACAAGTCGTTGGGGACCAGGATCGCGCAGGAGCGTGGGCTTGGGCCGTTTGCTGGGGCGATTTTCGGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGTCTACGGACCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 20587-24239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUO010000017.1 Micromonospora sp. MMS20-R2-29 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 20587 37 100.0 38 ..................................... TCGGTCCGGCGCGCGACGAACAGGCCGGCGAGCAGCGA 20662 37 100.0 35 ..................................... CGGATACAGATCGGCCGGGGTGAATTTGAGCGAGT 20734 37 100.0 39 ..................................... ACCGGTCGGCAGCAGCAGCATGTAGCCGTAGCGGACCGA 20810 37 100.0 40 ..................................... GCGCCCTGGCGTCGGGGCCGACCTCGTCGGGGCTGGGCTA 20887 37 100.0 38 ..................................... CGTACCGGCCCGACTCGTCCACGACGAGTGCGCCCCCG 20962 37 100.0 37 ..................................... CCCCACCCGGTGGCGTGCGCCGCCACCAGGTACATGC 21036 37 100.0 40 ..................................... TGGGCTAGCAGCGAACGCCTCGAAGCCGACTACCGCGCCA 21113 37 100.0 38 ..................................... TACCCTCACGACCATGACGTGGCAGCAGGCGGCCGGGA 21188 37 100.0 36 ..................................... CCGCCGGCCTTCACCGCAGGCCCCCATACCGCTGCT 21261 37 100.0 38 ..................................... CGCCCCGCAGCCCGTTCGGCCGGGGTCGGCTTGCGCAG 21336 37 100.0 38 ..................................... CGTCCACGGGGTCCGGTCGGTCGGCGTGTCGAGCGCCT 21411 37 100.0 37 ..................................... GCTGCGAGCGTTGCGCCGATTCCGGCGACCAGGCCGC 21485 37 100.0 38 ..................................... TCGGGGGGGAGAAGATCACCGGGGCCGCCCACATCGTC 21560 37 100.0 35 ..................................... CTCGTGCCGGGCGACCCGGGCGCGGGCCAGGTCGT 21632 37 100.0 37 ..................................... CTCGCCGCCCACACGATGGTCGGCGAACGTGCCGCCG 21706 37 100.0 36 ..................................... GGACCCGTCGTCGACGAGCGCCACCCCCGTGACCGC 21779 37 100.0 38 ..................................... GTACGCCCTGAGCAGGCGTCGTACCGCCAGGCCCTGCC 21854 37 100.0 35 ..................................... GAGAGCTACCCATACGACCGGGTCGTAATCGACAT 21926 37 100.0 39 ..................................... CGCTCCAGCTCTGCGTCGTCGAGGAGTCGCTGGGCGGTC 22002 37 100.0 36 ..................................... CCCGCCCGGCCCGACAACGTCCCCGCCACCGGCCGC 22075 37 100.0 37 ..................................... TGTGCCGGGAAGAAGCGTTCCGGCAAATCGATAATGG 22149 37 100.0 36 ..................................... GACCCGGAGGTCGCCGGTATCCCCCGTGTCGGTAAG 22222 37 100.0 39 ..................................... GAGAGCCGCCATGACCTCACGGCGCTGCTCTTCACTGGG 22298 37 100.0 35 ..................................... TCCACACCCATCGCCTTCGCCGCCGCGAGGAACTT 22370 37 100.0 38 ..................................... TCGTACTGCCGGGTCTTGAACCGGCCGTGCACGATCAG 22445 37 100.0 36 ..................................... AGCTCTACGGGCACTCTGATGTTGAGCGCATCCTTG 22518 37 100.0 37 ..................................... CCGGTGGTGTTCAACGGCTGGTACGCCCCGGAGGAGC 22592 37 100.0 29 ..................................... CGGTACGACCCGGAGCCCTGCCCCGAGTC Deletion [22658] 22658 37 100.0 38 ..................................... TGGCCGACGAGTTCCCATCGCACGCCGGCCGGGGCGGT 22733 37 97.3 38 ..................A.................. AACGACACCAACAACAAGCCCATCATCGGCCCGTGGAC 22808 37 100.0 35 ..................................... TCGGTGCCGTCGGTGACCAATCCCTGATCGACCGG 22880 37 100.0 36 ..................................... ACCTCCTCGCCCTCGTCGTCGACCAGCGAGAACAGG 22953 37 100.0 36 ..................................... GCCGCGTCGCCGGCGCGACCCAGCACCCACAGCGTG 23026 37 100.0 36 ..................................... GGGGATCTGCGGGTACGCCTGGCTGATCTGGCGGGC 23099 37 100.0 38 ..................................... GACTGCCCCAACCGGTGCACGTACACGATCCCCACCAC 23174 37 100.0 38 ..................................... GGGGGCAAGGACACCTTGCCCCCCTGCTGAGAGCACAG 23249 37 100.0 37 ..................................... GCGACCCGGGGCAGTGCCGACACGTCCGGCTGCCGGA 23323 37 97.3 35 .................T................... CGTCAGGCGGGGGCGATCGTGGTCACGGTGCCCGA 23395 37 97.3 35 .................T................... CGTCAGGCGGGGGCGATCGTGGTCACGGTGCCCGA 23467 37 97.3 37 .................T................... TTTGAACACTCCTCCGGCCCCCGGCGCATAGGCCCGT 23541 37 100.0 38 ..................................... GAGGCCGATCATCGGCAGGTCGACATGAAGGGCGTCGC 23616 37 100.0 37 ..................................... CACGTCGGGACGGTCGCGCGCAGCAGCTGGTTACCGG 23690 37 97.3 35 .................................A... TGATTCAGCGCAAGCTGACCGGAGAGACGTACATC 23762 37 100.0 35 ..................................... CATGAGTCGGACGGCGGGGATCGAGTCGTGCCGGT 23834 37 97.3 39 ...............A..................... CACGAGGCAACCGAGCACGTCTGGTACGACTTCACCGTG 23910 37 100.0 37 ..................................... CTGCGCGACGTTTTCGATATGGGCCGCGATATCGGGT 23984 37 91.9 37 ..........A....T............A........ TGCGCCTGCACGCCCTGGAGCACGCTGACCGGAGTAC 24058 37 97.3 34 ..............T...................... GCGCTCGCGCAGCTCGTCGGACTGCTGGTGACGC 24129 37 97.3 37 .............................T....... GGGGAGACGTGCGCCCGACGGCACGGTCTCATCCCAC 24203 37 83.8 0 ........T.........A......A........TTG | ========== ====== ====== ====== ===================================== ======================================== ================== 50 37 99.1 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : CTCCCTCTCGTGCAAGCCCGACTACTCGCCCGCCACCTTCGCGGAGACACGGTCGCCTATCAGCCGTGGACGGTGAACTGAACGTGGACCTGCTCGTCACCTACGACGTCGAAACGGTCACCCCACAGGGACAACGCCGACTCCGCAAAGTCGCCAAGATCTGCGAAGGGTACGGACACCGCGTACAAAAATCGGTCTTCGAAGTAGTCTGCCGCGACACCGACAAGGTTCGCTTCGTCGCCGCCCTCCAAGACGCCATCGACCCCACCCAGGACAGCATCCGCATCTACCACCTACCAGCCCACGCCCTCGACGACGTCGAACACCTCGGCAAACCACGACCCATCGAGCCACGCGGAGCCCTAGTGATCTAGGAACCCCAAGTAGACGCGAGAAACGCGGAGGGTTCCGAGGTGAGAAATCTGTATCAGATGGACGAAACGGACTGCGAGCAAGTCGATGAGGGATCGCCTGATCGCTATATTCGCTGCTCGTGAACC # Right flank : GGTTGGGTACGCGGCACCAGCTGCACATATTCGGGCGGTCCGGGGTCCTATGACGGTCCGGCTTTCGGCGCGACGGCCGCCCGGATAGGGTGTCCCTGGCGGGGCCGTGATCGTCCCGGCACGGGTCAACGGCCCCCCGTTTTCCCCCCGAAAACTCCTGCTGATCATCGACTGCCGGTGACAATCACGGCCCACCTCGCGATCGCGTCTGTGCAGCTCAGTGGCAGCTCGTAGCGAACGTTGACAAGCCAGGCACCGTCAGTTCGGACAGCGTAGGTCGACGGTTCGATTCCGTCTCAGCACGCGCGTTTCGCTTCGGTCCACCAGCCAGAAGGCCAGGCGGGGCAGCCGGCAAGGTCCGTACCGCCCGCGGCTACGGTCGAAATTCGATAGCTACGCTGTCTTGGGCACGCTGTGGGGGTGGGGTTGCGGTATCGATCACCCCACCGACACGAACCCCACGCTTCGGCCAAGTGTGCCGCGACGGATAAGGGGCGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //