Array 1 6053-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFV01000018.1 Xanthomonas oryzae pv. oryzae strain IXO99 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 6052 31 100.0 35 ............................... AGTTCAGACAATGCGTTAGCTCAGAAGCTGGGCGT 5986 31 100.0 35 ............................... ACCACGGAGTTTTACTCCCTTGATCAGTGGGCGAT 5920 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 5854 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 5790 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 5724 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 5659 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 5593 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 5526 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 5460 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 5395 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 5328 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 5262 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 5197 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 5132 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 5067 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 5001 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 4936 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 4872 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 4807 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 4741 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 4674 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 4608 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 4543 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 4477 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 4411 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 4346 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 4282 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 4217 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 4152 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 4086 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 4020 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 3954 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 3888 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 3821 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 3754 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 3688 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 3621 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 3556 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 3491 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 3427 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 3362 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 3295 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 3228 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 3162 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 3096 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 3029 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 2963 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 2897 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 2828 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 2761 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 2696 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 2629 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2563 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2498 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2432 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2367 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2304 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2240 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 2176 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 2110 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 2045 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 1980 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1915 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1849 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1784 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1719 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1653 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1588 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1521 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1455 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1386 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1320 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1256 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1190 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1126 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1061 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 996 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 930 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 862 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 796 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 730 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 664 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 599 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 533 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 467 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 402 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 337 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 272 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 206 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 140 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 75 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 92 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //