Array 1 151980-149937 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQX01000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_3992 NODE_2_length_492109_cov_2.72481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151979 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 151918 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 151857 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 151796 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 151735 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 151674 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 151613 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 151552 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 151491 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 151430 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 151369 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 151308 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 151247 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 151186 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 151125 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 151064 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 151003 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 150942 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 150881 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 150820 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 150759 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 150698 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 150637 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 150576 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 150515 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 150454 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 150393 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 150332 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 150271 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 150210 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 150149 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 150088 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 150027 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 149966 29 96.6 0 A............................ | A [149939] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 169253-168248 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQX01000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_3992 NODE_2_length_492109_cov_2.72481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169252 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 169191 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 169130 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 169069 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 169008 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 168947 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 168886 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 168825 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 168764 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 168703 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 168642 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 168581 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 168520 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 168459 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 168398 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 168336 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 168275 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //