Array 1 36353-37040 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLS01000008.1 Pseudomonas aeruginosa isolate 201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36353 28 100.0 32 ............................ TTGTGGCGCAGCATCCGGCGCGGATGGGACTG 36413 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 36473 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 36533 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 36593 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 36653 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 36713 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 36773 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 36833 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 36893 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 36953 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37013 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47515-45566 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLS01000008.1 Pseudomonas aeruginosa isolate 201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47514 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47454 28 100.0 32 ............................ ACGAATGCGAGTGCGACGGCGGATTCCACTAC 47394 28 100.0 32 ............................ ATATGCCGAAGCCGGCAACTTCTTCTGACTCG 47334 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47274 28 100.0 32 ............................ TCCCTGAGCGGGAAGGGAAGGCCATCAGGCCA 47214 28 100.0 33 ............................ ACTGGGTGCGGTCTCGGTACTCGGATGTTGAGT 47153 28 100.0 32 ............................ GTAGCCGACCGCTTGAACGACACCGCGAACGT 47093 28 100.0 32 ............................ TGGCTGCGTGCGGGCGAGTTCAAATGTAAGTC 47033 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 46973 28 100.0 32 ............................ TTGCAGCGTGAACATCGATGGCATGCATGTCC 46913 28 100.0 32 ............................ ATCACGATAACCGGTCACCATGCGCTTACGAT 46853 28 100.0 32 ............................ TTTACGCCATCAGCGGGGATCGATGGGGCCTC 46793 28 100.0 32 ............................ TGGGCATCCTGCTGCTGTCCGGCACGATGGTT 46733 28 100.0 32 ............................ TGAATCCCTCCTACGACACTTCCAACGTATTG 46673 28 100.0 32 ............................ GTCAACGATGAATATGGCATGACTATCTCGAA 46613 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 46553 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 46493 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 46433 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 46373 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 46313 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46253 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46193 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46133 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46073 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46013 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 45953 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 45893 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 45833 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 45773 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 45713 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 45653 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 45593 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //