Array 1 16206-16824 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000274.1 Streptomyces sp. CBMA156 CBMA156_274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16206 29 100.0 32 ............................. CATTTCTGCGGTTGACGTGACAGACAGTCAAC 16267 29 100.0 32 ............................. GGCAGGCCTCCACCGACTCCTGAGCGAGCACG 16328 29 100.0 32 ............................. CAGGGCGGCCCGTCGGTCGGTGCGGCGGCGAA 16389 29 100.0 32 ............................. GACGGCCCGAAGACCAACCCGAAGTACAAGCC 16450 29 100.0 32 ............................. GCGCAGTGGCCGCCGCCGGCGTGAACGACAAC 16511 29 100.0 32 ............................. CTCCGGATGTGACCTGCAAGACCATCAGGGCC 16572 29 100.0 32 ............................. TCGTGCTGGCGCCGGAGGATGTCCCGGCTGAC 16633 29 100.0 32 ............................. GCGGCCACCGCACGCCGCCGTCAGGCCCGTAC 16694 29 100.0 74 ............................. ATCCGGTCGGCAGATGTGATGTGCATCCACAAAAATCAGCCGCCACAGCGGGAGCCGCATCAGGAACTCCATCG 16797 28 79.3 0 .C.T........T..........-G.T.. | ========== ====== ====== ====== ============================= ========================================================================== ================== 10 29 97.9 37 GTACTCCCCGCACCTGCGGGGGTCAGCCG # Left flank : CCGGCTCCGCGAGTCCGCGGTGTACGGAGAGGACGCTCGCGCCGTCATCACCTCGGCGCTCCGGGCCACCTGATCAGGACGAGGGAAACGGCCCCGGTGAGGCCCCCGACGCAGGGGGCGTGATCCTCGGCCGTCCGACCCATCACCACGTCAGATCCTCCGCCCGATCGCTGCCCGGTCCCCGGGGGCCCCGCGAGGTGAGGATGCGCAGCGCATCGTGGGAGAGTTGCCTCCGCAGTCGTGGATGCGATCACCGAGACCGGGCAACCGTCAGGTTCGGCTAGCCAACCTGTCCATCCGTGTTCCGCTCCCACCACGCAGGCCGAATCGGCGGACCTACAGAGCAACAGTGGCCCTCGCCAGGCCGATCATGACACGATGTGCGAGCAGGTCTGACACCTCGACAACGTGCACAACGGGTCCGGCGAAGACCGCACTTGCACACCCGGCAGAGTGGTCAAGAAAGTGCAAAGCCCCTACTTCGCCGCAGGTCACGAAGG # Right flank : GAGTGCGGGCACACCGCCCGAACGTCTGACCCGCGAGGTACGAGCTGAGAGGGTGTTCTGCGAGTCTTGAGTGGTTCTCGTAGTCCTTGAAGGCAAGTTGTCCGGTTCCAGTGCTTCACGGCGGGCAGTCGGAGCGGTGTGCTGATGGGTGTGGGTGAACGTCCCGCGTACCCGAGCGACCTGTCGGATGAGGCCTGGAGGCTGATCCGGCCGGTCCTCGCCACGTGGAAGGCCAGGCATCCCTCGGTCAGCGGCCATGCGGGCCGGTACGAGATGCGGGAGATCATGAACGCGATCCTCTACCAGGCCCGTACCGGCTGCCAGTGGCGCTACCTGCCCCACGATCTGCCACCCAAGAGCGCGGTGTACTACTACTTCGGCACATGGCGCGACGACGGGACCGCCGAGACCATCCACGACCTGCTGCGATGGCAGGTCCGCGAAAGCCGCAAACGACACGAGGGCCCCACCGCGGTCGTCCTGGACTCCCAGACCGTGCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCGCACCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24443-22953 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000253.1 Streptomyces sp. CBMA156 CBMA156_253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24442 29 96.6 32 ............................A GGCGCCGGAGGAGCGGCAGCGCGGTATCACCA 24381 29 100.0 32 ............................. GTGTAGTTGTCGTAGCCGTCGTGCAGTTGCCC 24320 29 100.0 32 ............................. GGGGACATCACCGCGCCGGAACTCGCCGGTCA 24259 29 100.0 32 ............................. AAGCATTCCTGCGCCGTCGCCCTCCACGACCA 24198 29 100.0 32 ............................. ACGGCCCACCAGGTCGCGGCCGCGCCGGTGAG 24137 29 100.0 32 ............................. GTGTGGCCGCGCTGGCCGGCACCGGATCCGGT 24076 29 100.0 32 ............................. CCGGCGCGCTTGCGCGCCCGTTCCCGCTCCTT 24015 29 100.0 32 ............................. CTCGATGCGTCGTTGCGGATGTGGCTGACGCG 23954 29 100.0 32 ............................. GTGGACAGACCCACTACGGCCACCACCGTGCT 23893 29 100.0 32 ............................. AACTGCTCCGGGTCCCTCATCTGCGACAGTTC 23832 29 100.0 32 ............................. CTCTCCCGCTCCGAGTTCCCCACCGTCTCCGT 23771 29 100.0 32 ............................. TTCCTCGTCCGGCATGATCCCGGCCTGGTACT 23710 29 100.0 32 ............................. GCCGTCTGGTCGCTCACCGCCAGCTCGGCCCC 23649 29 100.0 32 ............................. GAGACGATCAGCGACTTCGGAACGGCCGAGGA 23588 29 100.0 32 ............................. TTGATCGAGACCGTCCCCGGCGTGGGGAGCCG 23527 29 100.0 32 ............................. ACGTCGCGCGGCGCCTGGCCGCGGTGTCCGGC 23466 29 100.0 32 ............................. GGTCGCGGCCACCACGGGGGCCGCCACCCGAA 23405 29 100.0 32 ............................. ACTCCGACGGCCAATCTTGGGATCAATGGCGG 23344 29 100.0 32 ............................. GTTCCACAGTCTGCTACACGGCTCCATGAGCC 23283 29 93.1 31 ...........C.T............... GAGCAGTACCTCGGCCTACTCGACGCGTTGA 23223 29 86.2 32 TG.............TT............ AACGCGCACCGCCGCTACACGAAGCACCGCGC A [23214] 23161 29 93.1 32 .C.T......................... GTGACGGCGGTAGCGGGCAGTTCTGCCCGTGT 23100 29 89.7 29 ........G...T....C........... TGCAGTTCCAGGTCGTGACCGTTGAAGGT 23042 29 79.3 32 .G.T.......GT.G.T............ ATTCCCTTCGCCAAGGGCGGCTTCACCACCAA 22981 29 96.6 0 .G........................... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.4 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : ACGCGACCGCGCGGCCCGAGCACTCGACCTGGACCCAGCCGCGCTGCCGCCCGAAGCGGCTGACCTGGCACGGCTGGTAGGCCTCTCCCGGAGGCCGGTGGCCGCGAGCTGCCGTGTCGTCGGGTACGGGTGCGCTCCACTCGCACCCCTCTTCGATTCGGCCTCCCGGCAGCCCCGACCAAGTGCGATGGGCTGACCTGCCTCCCCTGCCTCGGCCTACCAGCAGTCGGCCGGCAGGCGACTGGTCAAACCTCGAATGGCGGTAATCCGCAGGGTGGTTCAGCTGAACATCTCAGCCACGGACGGAGCCCACTGTCCCTCGTGTGTACACCCGGCCCGCATACCGGCGGCCGTCGAACGCCAGCGGGAGCAACGCATGGGATGATTCACGAGATCCTTGACACCTCAACATCTCCGGCGCGCTGCCAGGCACTTGAAAAACAGCACGACAGCAAGGCAAAGAAATGGCAAAGCCGCCGAATCGCCGCAGGTGGCGAAGG # Right flank : CCGCCGTGGCGGCGTGTCAGGTCCACGGGTCGGAGCACATCCAGTGCCGGCCCGTGGTCCAGCCAAGGAGGACCCGGCCCTTGCCCTCGCTCGCCGAGCCGCCGGCGGCCGCCTGGCCGAGGCCGGTGAGGGCTCGGGCGAGGCGGGCGGCGACGTGGGCGGGGTGGCGGGCCAGTTCCTCGTACAGTCCGGCGACGGTCCGTTCCTGTGACTCGACGGTGCACAGGGAGAGTTGGAACACCAGGTGCCGCCACGCGTACGCGGCGTCCTTGATCGCCGGCCGGGGGCGCGGGTTGCCCTGGATGCGGGCCGTCTTGCGGCAGACCGTGGCGAAGCTGCGCCGGGCGAGGTCCTCCCAGCCGGGGCTCGGGCTGATGCCGACCCGGGCGACCAGGGTGGCCAGGTTGTGGGTGGTGAGGATCTGGGCCTGCTCGATGACCATCCCGTTGGCGGTGACCGACCACTCCGGGCCCGTCCCGGCACGCCGGGCGCACAGTTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37409-36404 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000253.1 Streptomyces sp. CBMA156 CBMA156_253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37408 29 100.0 32 ............................. CCGCCGTCCGTCGAGTGCCAGGCCGGCCGCCA 37347 29 100.0 32 ............................. GCCGCGTGGCTCGACCGGGCCGCCCTCGCCGA 37286 29 100.0 32 ............................. GTGGCCCCTTCGGTGGGCTGGAATCCGGTTTC 37225 29 100.0 32 ............................. CCGCCCTGGAAGCCGCGGACGGCGACATGGAC 37164 29 100.0 32 ............................. GCGATCGAGGATGCGACGCCCGGGGTGGCTGC 37103 29 100.0 32 ............................. AGGACTACGTCCTCTTCCTCCACGGCCGGCGA 37042 29 100.0 32 ............................. CTGCGCGGCTCCTTCCTGGAGCAGGCCCAGGT 36981 29 100.0 32 ............................. CCACCGAGACCGCCGACGGCCTCGAAGTCCTC 36920 29 100.0 32 ............................. CTCGCCGCCGCCCCGGCCAAGACCGACTCCGG 36859 29 100.0 32 ............................. TTGCCCTTGCCGGTGGCGTCGGCCAGGCGGCG 36798 29 100.0 32 ............................. GCCCTACCAGGCATGCAATCTCACCTGGTCTT 36737 29 100.0 32 ............................. CGCTGGGCGACGTCGCTGCCCTCGGGGTGGTA 36676 29 96.6 32 ...................A......... GACCACAGCTGATGAGCACCACCACCGCGCAC 36615 29 100.0 32 ............................. GTTGCGGAGGCCAGAGTTGAGCGCATCGCCGA 36554 29 100.0 32 ............................. CGCCAGGAGTCCTGGACGTCCTGCGCATCGGT 36493 29 100.0 32 ............................. CGCCCGTACCGTTCGAGCTGGCCCGGATCGTC 36432 29 93.1 0 .........A...G............... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : GACACCTGGGAGAAGGAGACCCGCGACAGCTACCTCGCCGGCTTCGAACGCGTCTACAACGGCAGCCGCGCCCCGCTCTTCATCGGCAACCACTTCGAGGACTGGAACGGCGGCATCTACATGCAGGCCATCGAGGACGTGATGAAGAGCGTGTGCAAGCGCGACGGCGTCCGCTGCGTCTCCTTCCGCCAGGTCGCCGACTGGCTCGACGTCCAGGACCCCAAGGTGCTCGACAAGCTGCGCCAGCTCGACCCCGCCCAACCGGCCGACTGGTCCCGCCTGACGAAGTGACCGGGGCGCCACCCCTCGGTGGCCGGGTCCCGCGCGATGGCGCGGGGCCCGGGCCGCTGTCCGGATCGGGCGGCCGCCTTCGGTCACATGGCATGATGCACAGGCACTTTGACACCTCAACAACTCCCACAGGGCAACGCCTGGACGCTGACGCGTCGGCTCGCGCAAAGAAATGGCAAAGCCGCCGCATCACCCCAGGTCGCAAAGGG # Right flank : GCCTCGCGAGCCTCGGACCAGATCGGCTGGGCGCGCAGGGCGTTGACTGCGGCGAGGTAAGTCGCGCGCGGGGTCGACGTCCCCGCCCGCCGCAGAGGACGCGGTCATGCCCCGGTCCGCCTCGACCACGGCGGCGTGCAGGGGCAGCAGGTCAGCGGGGAGGTCAAGCCGCTTGGGCATGCCGCCACCGTACGACGGACATCGGACGATGCAGGTCAGGCGGCGGCCAGGACGCGGGCCCGCTCGACGAAGTCGGCGACCAGACGGTGCGCGCCGAACGGCTCCATCCGCCGCTGTAGGTCGGCGACGGCTTCGACGGCGCGGCTGCTCTTGACCTTGCCAGCCAGGGAGAGCGTTCGCAGGCCCGCGGCGTGGGCCTGTTCGAGGTCGCGCCGCTGGAGGTGCGTGGTGGCGAGCGCGGCCTGGGAGAGTGCACCTCGGCGGGCCCGGTTCTGCGAACGTGCGTGGTCGATGGAGCGCTTGGCGTGTTCGGCCGCTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45438-45771 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000003.1 Streptomyces sp. CBMA156 CBMA156_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45438 29 100.0 32 ............................. TGTCCGGGGTCCGTGAAGACGGCCGCCCCAGA 45499 29 100.0 32 ............................. GCTCCGGCGACGCGGAGTTCTTGGGCCAGCTC 45560 29 100.0 32 ............................. TCCGTGACGTTCGACATCAAGCCGAATGTCGC 45621 29 96.6 32 ............................A GGATCGCCAGGGCGTGGGCAAGGTGCTGGTGG 45682 29 100.0 32 ............................. GCCCGGCGCCACTGGCCGAGAATCTGGACGAT 45743 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CGCCCCCCAGCGACAAGGTGGCCCCGTGAACTCCTGGATCGACCCGGAGGCGCTCTGGAAGATCGTCGTGGTCGGCTTCCTCGCCGGCGCCGGCCTGCCCGCGCTGTTCGCCATCGCCGTGCGCGCCCTCAACCCGGCGGCCGGGGCCGAGGGGGACGGGGCCGCCCGGCCCACTGCCGGGGCAGGCGGTTACGCCGTGGCCGCGGTGTGCTTCGCGGTGGTCCTCGCGGCGATCGGGTGGGGCATCCTGCTGATCGTCCACCACAGCTGAGCGCACACCGCTGCCCTTGACCGTCCACCCCTGTGGGCAGCGTGGCGGCGGTCGGCAGCGGGCCGCGGCAGCTCGGCAGCTTGCCCCGCCGGGCTCGCCCGTGGGATCGTTTGCAGCGCGCTTTTGACGCCTCAACAGCTCTACGGGCTACGTTGGGGGCTCCGCGGGGCGGCGCTCCACGTCATGCAATGAAATGGCAAAGCCGCCGCATCGCCGCAGGTCACGAAGT # Right flank : GTCGCCTGCGGCCCGGATGGCGTTCGTCGACGCGGTCGAGGGGCAGGCGCCGGTTCCGGGGGAGGTTCGGATGACCAGGTTCTGCATGGCGCGTGTAGGGCCGGCGGGATCCTGGCATTGCGGGGGCGTCGTGCTGTCGAGCGCCGTTCGTCGGCTGATCCGCGAGGGTGGGTGTCAGGCGGTGGCGGGCGGGTCGGCGAAGGTGTGCCGGTAGGCCTGGGGGGTGGTGCCGAGGCGTCGGGCGAAGTGGTGGCGGAGGTTGTCGATGCTGCCGAAGCCCGCGCGGTGGGCGATGGCGGCGACGGGGTCGTGGGTGGTCTCCAGGTGGTGCTGGGCGAGCAGGACGCGCTGGCCGGTGAGCCATTGCAGCGGGGTGGTCCCGGTTTCCTGCCGGAAGTGCCGGGCGAAGGTCCGCGGGGAGAGGCCGGCGTGGCGGGCCATCCCTTCGACGGTCAGGTCCCGGTCGAGGTTGGCTTCGATCCAGGCCAGGACGGGGGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14423-14089 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000456.1 Streptomyces sp. CBMA156 CBMA156_456, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14422 29 100.0 32 ............................. GTCATCGGGGGGCTCCTCAGTCGCGGGTCGTG 14361 29 100.0 32 ............................. AAGAACATGTCGAGGCTGGCCGGGATGAGGTC 14300 29 100.0 32 ............................. GTCAGGTCGCGGGTGGCGGTGACCTCGGCGGC 14239 29 100.0 32 ............................. ATCCTCGCGGCCGTCCGCACACACATCTGCCC 14178 29 100.0 32 ............................. TTCGCCTCACCCGAGTTCCGCGCGCAGACCGG 14117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CCCGCCGTACACCTCGTGCCGCCACACCATCCCGCGCGGCGCCCGCCCGGCGGCCGTCTCCGGATGCTCGGACGCCCACGGCAGCAGCGCCGCCGCCTGACCCGCGGCCGGCGTGACGTCCACGACGACGGTGTCCGAGGCCCGGGGCCGGCCGCCGCGCCGCTTGCGCGGCACCTCCGGAATCGACGGCGGACCGAACAACTCGACCGCCCGCCAGCACTCCAGCAGATCCCCCACCCGCCGGTCCCCACGCCCCACCCCGTCGCCCCCTACCTCACTCAGTGGCGCACACCCGCTTCGTGTGCCGATCAACTGGCCGCAGAATCTACCGGACGGTGCCCACGGTGGGGATCCCCACCATGGGCATCCCCCGCCGCGACACCGCCGGCACATGGCACGATGTCCCCGGCACCTTGACACGTCAACAGACCAACGGCGCTGCATCGCAGCGGGGTTAGCAAAGAAACCGCAAAGCCGCCACGCAGCCCCAGGTCGCGAAG # Right flank : GTCATCAACAAGTTGATCATGCCGATGCAGGCCGGGGCAGGCCGAGAATTCTCGGTCACCGTTGGCGGCGGATCATCGTCAGGCCGTCACGGATGGTGAGGATCGTGGCCACCACGCGGGGGTCCGTCGCGACCTTGAGGTTGAAGGCGTGGACGTGCTCGGCCCATCTGGCGATCAGCAGTTCGAGCCACTCCTGGCCGTCCTTGGCGTCGTCCGGAGGTGTTCGGGGCAGTTCGTCGAGGTGGAGGACGGTTCCGCCCCACAGGGTGTTGTCCACGAGCATCAGGCCGTGGGGGGCGAGCAGCTCTCGGTCCATGACGGTCTCGAAGTATCCGACGTAGCTCGGTTTGTCGGCGTCGATGAAGATGAGGTCGAAGGGCCCGTCGACGGCCCGCAGGCAGTCCGCGGCGTCTTCGGTCCGGGGGATCACCTTGGAGCCGTGCGGACTGGCGGCGAACGCCTCCATGGCCACGGCCCTGGCCCGGCTGTCCACCGCGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13742-14885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000099.1 Streptomyces sp. CBMA156 CBMA156_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 13742 29 100.0 32 ............................. CGTGGTACGGCGTCGGCGGCCTGGCCGGCTAC 13803 29 100.0 32 ............................. GGCCGGCCGTGGGTGCGGACCAGCTCGCGGAC 13864 29 100.0 32 ............................. ACGACGGCGCCCCCACCCCTTCCTCTTCAAGG 13925 29 100.0 32 ............................. AGCACCAGCGGTACGAGCAGCACTACGAGTGG 13986 29 100.0 32 ............................. ACCTCCAGGAGTCCCTTACTCCCATTCTTCCG 14047 29 100.0 32 ............................. CTGGGAGGTGAGGTGACCCTGCGGGTCGTAGT 14108 29 100.0 32 ............................. TGGCGGATCTCGTCCCAGCCTTCGCGGGGGAG 14169 29 100.0 32 ............................. TCCATGGCAGGGCTCCCCTTCCGAGAGCGTGC 14230 29 100.0 32 ............................. AACTATGCCGGGTATTGCCGTGACATGGTCAG 14291 29 100.0 32 ............................. ATCACGTCGAGGCCGGCGCCGCGGTCGGACAC 14352 29 100.0 32 ............................. CTCGGGCGGCTGCTCCGGCACGGAGTCTGCTC 14413 29 100.0 32 ............................. TCCTGTCGCAGGGAGGGTCTGGCGGTCGTCGC 14474 29 100.0 32 ............................. AGAGCGCGCCTCCCCCAGCGGTTCCCACAGAG 14535 29 93.1 32 ......T.C.................... TTCGAGGGCTCCCGGCCGATGCCGGAGATCGT 14596 29 96.6 32 ........C.................... CTTCCGATGGTGCGCACGCGGCGCTCCCGGCG 14657 29 89.7 26 .C......C.....G.............. CCCCGTCCTGCCAACCCGGGACGATG 14712 29 69.0 54 C.T......T.CG..C.C.AA........ ACCCTCAACAGCGGCGGCACCACCGGTCTGGCGCCTGAGCGTCGTCGACACGAC 14795 29 86.2 32 A............GA..A........... CGGATACGCCGTAGGAAATAGAGGGCGAAGAG C [14804] 14857 29 89.7 0 .AA.....C.................... | ========== ====== ====== ====== ============================= ====================================================== ================== 19 29 96.0 33 GTCCTCCCTGCACCCGCGGGGGTCAGCCG # Left flank : CGAGGACCTCCGGCTTGACCTCGTCGTCAGCGGCTCCAACCCGACCGGGACGGGGACCTACTGACTGCTGCTGGTGGCGATCAGGCCCGACCACGCAGTACGGAATCGCAGGCCGACCGGGTCCGGGTGCCAAAGTCCGCACCTCGAACCACCTCGGCGCCCACACCCTCTACAGCCGCCCCAACCACCTCGACTCATCGGCCACTTCAGCCACCGCACCTTGACCCCGACACCACTCCCGCCCGCCCGCCCGCCCGCCGCGAGGTGGCTACCGCAGCGGCCGTGTGACACCACCGGCAAAATTTGACGCCTCGACAGTCCTCTGACTGCCCCACGCAGCGAAGCAGTGGTCATCGCCAAACCAACCGTGACACGATGTGCCAACGATCCTTGGCATCTCAACAGCTCACCCAGCAGGCAACCCTGAGCCCGCTCCGATTCAACCATCGAGCAATGGTCAAGAATTGGCAAAGCCCCTGCTGCGCCACAGGTCACGAAGT # Right flank : GGGTTCGGCCTGCCGCCGTGTCAGGCGGCGCAGTTCCCTGTGTCAACGGAGCCGGCTGAGCGCGACGTCATCCGCCGCGCTCAGCTTGATGTCCCCTGCGGGAACGCCGCAACCGGGTCTCACGCACGTCCACGTGGGGACGGCTGGTCCCCGCGCGCCTACGGCCCCGCCGCCTCCTGGTCGTCGGCCGCGGGCTGCGCCCCGGTCATCGCGACGAGCGTCAGCCCGTCGAAGTCGACCGGCTTCCGTCGCTGTTCACCCGCCGTACGCAGTTCGAAGCCCTGTTCGTTGGCCGCCGTGTGGACCAGAACCGCCACCCCTGTGCCGACGCAGCCGCTGACGGCCTGCCAGAGTTCTTCGCGGACTTTGGCGGAGATGGTGCCGACGTACAGCTGCGGGGTGACTTCGATGAGCCAGCGGGTCAGCGCTCCGCGCACGTGGTCGGGGACCGCGGTCGCGGACAGCACGGTCATGGCTGCCATCGGCGCTCCCTGACGGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCTGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24974-25490 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000099.1 Streptomyces sp. CBMA156 CBMA156_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24974 29 100.0 32 ............................. GTGTCTCTCGGGGGGCTGCTCGGCGGAGGTCC 25035 29 100.0 32 ............................. GCGGCGGCGAGCTGGGCGGGGTCCTCGAACGT 25096 29 100.0 33 ............................. TCCGGTCGCTGGCGGGCGTCGTGGAGGAGCAGG 25158 29 86.2 31 TC..C.......................C ACCACCGCATGTCGAATGCGCATGCGGTTAC 25218 29 100.0 32 ............................. GTTTCGGCGAACTTGTACGAAGCCGCCTTGAC 25279 29 89.7 32 T.........................T.T TCGGGCAGCCACTGCCGCACGAGCCGTCCGCC 25340 29 93.1 32 C.................A.......... GCCGAAGACCTGGGCGACGCGCTGTTTGAACT 25401 29 93.1 32 C...........T................ GTCCACTACGAGGGCTCCGCCGTACCGAGTGG 25462 29 86.2 0 T........A...T......T........ | ========== ====== ====== ====== ============================= ================================= ================== 9 29 94.3 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : GCGCTCGCTCAGGACGGCGTCCCACAGGGCACCCGCGACCGCCGCCGTGTCCAGCAGGTGACAGATCACGGGGTACGGGCCGGGCAGGCCTTCACTCTTGCCCCACAGGCGAGTGTCCGGATCGGCGGATCCGGACTGGCCAACGGGCTTGCTGTCAGTCATGGCTGAATAACTATCAGCTACCACTGACAATCCGTCGCGGCGGCTGCGAAGCCGACGACGGGAGGAGCGCCGATGCGGCAGGCCTCCCGGGCACATCACCCGAGGTCGCGACGCCGAACGCCGCGCGGGAACCGGCCGCGTAACGATTCCGACACTCAACACCGGAATCAACTTCCCCATAGGTTGGAATGTTTGGCCTACGGCAGGCCCAGTCATGGCATCATTCGGGAGTTCCTTGACATCTCAACGATCCAACGGCACAAGGGCCAAGCCGGCCTGTGCGTCGCTCGCATGGCCAAGAAGTGGCAAAGCCCCCGCTTCGCCGCAGGTCACGAAGT # Right flank : GCAAGCTCTCACACCACCCGCCCCGTCAGCCTTCCCCCGCGCGAGGCGCTCCCGCTCCGCGGTCGCCCGCGGGTCGCCGTACCCGGCGAGCAGGGCGAGGGCCTCCGCCCGGTGCTGCCGGGCCGCCTGGGGGTCGTCGCCGGACACCGTTGCCGCGAGGGCGGCGAGGGCCAGGGCCTCGTGCCAGGGGTCGCCGAGGTCGCGGTGGGCGGTGGCGGCCCGGCGCAGGAAGGCGGCGGCCTCGGCGGGGCGGTCGAGGTGGCGGTAGGTCTCGCCGGCGCCGTGCCAGGCGAGGGCTTCGCGGCTGCGGTCGCCGAGGCGGCGGTGGAGGACGGCGGCGCGCTGGTAGGAGTCGAGGGCTTCGGTGGGTTGGCCGTCGGCGCGTTGGGCGTCGCCGAGGGTGATGAGCCAGAAGCCTTCCAGCCGGTGGTCGCGGAGGTTCAGGGCGATGTCGAGGGCCGCGTGTGCCGAGGCGAGTGCGCCGGCCGGGTCGCCGTCGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29238-29512 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000099.1 Streptomyces sp. CBMA156 CBMA156_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29238 29 100.0 32 ............................. GTCTTGGACCCCCGCGGCAAGGTCCCCGCCCA 29299 29 100.0 32 ............................. CTCTTCGCCTCCTCCATGGGGGTCATGTCGGC 29360 29 96.6 32 C............................ ATGCACCGCCGGACCCTGTGGCTGGCGCTGCC 29421 29 96.6 32 C............................ ACGTAACCGCTGTCGGCCGCGCAGATGGGACG 29482 29 89.7 0 ............T..C........G.... | T,G [29504,29510] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : AGTTCTTTGGCGGATTTCCCGAGGCGCTTCTGCAGCGAAGCGGAAGGATCGGCTTCCCATCGACGAGCCATGACTGCCCCCGTTGATATCGTTCTCGGCACGGAGCCGCGGTTTCTCCATCTTACACCTGATGACTACTCAGGGGAATATTCAGTACATTCGCCATGTACTCCAAAATGATCACCATCGCGGCACAACGGCCACATTTGTGACAGTATTCGTGCGCCGGGGGGCGGCGACGGGAGCGCGCGGCGCGACTGAACTCGCGCGGGCGCGGAGACGGGTAGCCCTGCGCTCGGTTCATCGGTGCGGCGCCCAAGCCCGGCGCCCCTGCGCCAGTTGCTGCTCACGCTCCGGCTACTGCTCTCTCAGTGCCGCGTGGGATGATTCACGCGCTCCTTGACATCTCGTCAGGCCACGGCGGCGGTGATGCTCGCACGGGAGGCGTCCGGGCGTGCAAAGAAATCGCAGACTCGCTTCATCGCCCCAGGTCACGAAGT # Right flank : GTCCGACTCGCGGCCTTCCCATGGGGTTGTCACCGCGAGGGCGCGTGTCACCCGCTCCACGCCCGCCCGCCGTACGGCCTCAGCCAGTGCGCGTCCCGTCGAGGTACGCGAGGACGGCGAGCACCCGGCGGTTGTCGTCGTCGGAGGCGCCCAGGTTGAGCTTGGCGAAGATGCTGGACGTGTGCTTGCTGACCGCGCCCTCGCTGAAGTGCAGGCGCTGGGCGATCGCCGCGTTGGAGCGGCCCTCGGCCATCATCGCGAGGACGTCGCGTTCCCTCGGGGTGAGCAGGGCGAGCGGCTGGTCGTAGGCGTTGCGGGCGAGCAGGCGGGAGATGACCTGGGGGTCCATCACCGTGCCGCCGGCCGCGACGGTGTGGACGGCGTCTACGAACTGGTCGGCCTTGGAGACCCGGTCCTTGAGGAGGTAGCCGACGCCGCCGGCGCCGTCGGCGATCAGCTCCCGGGCGTAGAGCTGTTCGACGTGCTGGGAGAGGACGAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 31997-32712 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000099.1 Streptomyces sp. CBMA156 CBMA156_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 31997 29 96.6 32 A............................ AGGCGGACAACGACGAGTGGATCCAGATAGAC 32058 29 100.0 32 ............................. AACGTCGCGGGGAGCATCAGCCAGCTCGGACC 32119 29 100.0 32 ............................. GAGCGCCCGTTGGCCGGCCGCGAACCCACCGA 32180 29 100.0 32 ............................. ACGTTTCGGTTCAGGGAGTCTCTGGTGCGTCC 32241 29 100.0 47 ............................. CTCGCCCGCCTCGGTATCCCGGTCCCGGACTCCCCGGAACCCACCAC 32317 29 100.0 32 ............................. TCAGCCAGCCAGGCACCGGGGATCTTCTTGTC 32378 29 93.1 32 .........C.................G. TGACAAGCGGCTCCCCGGAAGCCGCCTCGCGG 32439 29 100.0 32 ............................. CGTGTTGTGTGGATTCGGTGGGATCTTGGCCG 32500 29 96.6 32 .................A........... CCGTAGAACGCCCGGTTCCCGTCGACGGTGGC 32561 29 96.6 32 .A........................... ATCAAGGACACCCTGGGTAATCCGATTTGGAA 32622 29 89.7 32 ...T.......A....T............ GCGGCCTGGTTGGTCGCCCACAGCTCCTTGAG 32683 29 93.1 0 ...........C.....A........... | A [32694] ========== ====== ====== ====== ============================= =============================================== ================== 12 29 97.1 33 CTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : CGCCACGTGGTTCTCCGGCGACCGGGGTCGCCTGCGGGCTGCTCACGGGGCCTCCGATCGGGTACGGCGCGGACCGTTCATGATCGCAGCCGCCTGGCTCGACCCTGACTGCGGGAGCCGCGGCTTGAACCGCTTGCGCAGCCCCAACAGCCCAGGGGCCGAAGCCTCCTGCGTCGTGCGTGCCGTTCCTCGCACCTCGTCCTCCCCGCGTCGATCATGTGCCGCCCGGGGCTCGGGGCACATGATCAACCCTAGGAGTGGCGGGGCGGCGGAAGAATCCGGCTGCACCCCCGGCAGGGGTGGGTGTGGGCCCACCTTCACACTTGCCTGCGGGCCGCACAGCGGTGGCGGCGGACGCCCGTGGCGGGCAAGCACTGAGATGATTCGCTGGCTCTTTGACATCTCGACAGTTCAACTACAGTGGAGAGGCGTTCGGGCAGAGACGCACTTGACGATGCAAAGAAACAGCAAAGCCGCCGCATCGCCCCAGGTCACAAAGT # Right flank : GCCGGCCGACACCGTCCGCACCATGCGATGCGGCAGCATCGAGGCCGTCGGCCGCTCCGTGCCCAGATGACACCGCCGTTCACGCGGCCCGACGACGCCGGTCACCGCACCACCGGGATCGCTCCCGAGCGCCAGTCCGTCAGCCGCTTGCGGATGCTCGGCACCATCGGCAGTTCGTCCGTCTCGGCCGGGGCGAACCACGCCACCTCGTGCGACTCGTCGGACACCCGCAGCTCCCCTCGGATCGGGCGTCCGAGGAGGCAGACGGAGAACTCCTGCCGGACCTCGCCGTCGTCGTACGCGAGGACGTGCCCGGGGTTGGTGTAGGTGCCGACGATCCCGGTGATCTCGATGTCGAGGCCGGTCTCCTCGCGGGTCTCGCGGATGCCGCACCCGGCGATGGACTCGCCGATGTCCATCGTGCCGCCGGGAAGGGCCCACATGCCGTTGTCCGTCCGGCGCTGGAGCAGGATGCGGCCAGCGTCGTCGGTCACCACGAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 38076-37683 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSJQ01000099.1 Streptomyces sp. CBMA156 CBMA156_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38075 29 96.6 32 .................A........... CCGGGATCCGGGGCGATGCAGGACTGGTCGGT 38014 29 96.6 32 ............................T CGCGTCCAGTACCTCGGTCCACGGCCGGTGCT 37953 29 96.6 32 ............................T CGCGTCCAGTACCTCGGTCCACGGCCGGTGCT 37892 29 100.0 32 ............................. CCGAGCGTGATCAGATCGCCAGGCTGGAGGCA 37831 29 96.6 32 ..........................T.. GAAGTGCCCGCCTACTTCACAACTCCACAGCG 37770 29 100.0 32 ............................. CAGAACCGGATTGGCGCCAGACACGCCCCGTC 37709 27 93.1 0 ................--........... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CGGCCAGCACCAGCACGCGCCTGCCCCGGTCGGCCGGCAGCCGCCAAACCGCCCGTATCGCCCACCCGTTGAGCCCGGCCATCACCAGCCCCGCGCTCGCGAACACGTACGGCACCGCCTTGGGGCGCGGGGCCAGCTCGTCCTCGAAGCCGACGCCGTTGTAGAACAGCGGCACCGCGATGCAGAAGAACAGCACCACCGCCACCGTCTCCAGGGTCAGCAGCACGGTTGCCGCGGCCTGCGACAGCCAGGTGAGACGGGACATGTGCGGGGCCTTCCGGTGGTGAGGTGAGGGTGACGGAGGACCCGTCATCGCGGCGTGGTCGCCCGGCAAGCCGTGCGGATGATGGTGCGCGGGCCGGGGCCGGCGGGTGTCGCGCGCTGCTGCGGGCATGGCACGATGTGTGGGCTCCTTGACGCCATCCCAAGCTGCTACTGACGGGGCGCCACAGCATAGTCAAGAAATGGCAAAGGCCATGCTGCGCCGCAGGTCGGAAAGC # Right flank : CTCGTCGACGACGTGCCGCTGTTCGTCCCAGCCTTCTCCCTGCTTGCACCTCACCAGCAGGGGCGCGCCGGTGGCGGCAACGCGGTTCAACAGCTGAACGGTGTTGTCGGGTTCCTCGGCGGTGGCTCAGTGTGCGGGGTCGGCGCCGCACGCGGCTGTGGTGAGGAAGGCGGTGACGGCGGCCTTGGCGCCGCGCGGGTCGGAGGCGTCGTACGGGTTGTGGGAGAGCACGAGTTGACGTCGGCCGTCGGCCGTGCCGGCCACCATCGTCGAGTAGCCGGGGAGGTCTCCGCTGTGGCCCCAGAGCACTCCGCACGGCGTGTCGAACCGGGCCAGCCCCAGCCCGTATCCGCGCCCGGGTCCCGCGTCCACCGTCCTGGTCATTTCGGCGAGTTGGGCGGGCGGCAGCAGCCTGCCGCCCAGCAGGGCGGCGGTGAACCGGTTGAGGTCGTCCGCGCTGGATATGCCCTGTCCGGCGGCGCCCAGGACGGACGGGTTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //