Array 1 96181-94871 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIC01000003.1 Escherichia coli strain EC_58 NODE_3_length_323212_cov_17.037644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96180 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 96119 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96058 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95997 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95936 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 95875 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 95814 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95753 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95692 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95631 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95570 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95509 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95448 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95387 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95326 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95265 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95204 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95143 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95082 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95021 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94960 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94899 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122720-121898 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIC01000003.1 Escherichia coli strain EC_58 NODE_3_length_323212_cov_17.037644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122719 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 122658 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 122597 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 122536 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 122475 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 122414 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 122353 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122292 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 122231 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122170 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122109 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 122048 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 121987 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 121926 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //