Array 1 3367-1324 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDU01000962.1 Streptomyces acidiscabies strain 85-06 NODE_218_length_16081_cov_12.1384_ID_435.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 3366 37 100.0 36 ..................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG 3293 37 100.0 36 ..................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC 3220 37 100.0 36 ..................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG 3147 37 100.0 37 ..................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG 3073 37 100.0 35 ..................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG 3001 37 100.0 35 ..................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG 2929 37 100.0 36 ..................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC 2856 37 100.0 35 ..................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA 2784 37 100.0 37 ..................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA 2710 37 100.0 36 ..................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT 2637 37 100.0 36 ..................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG 2564 37 100.0 38 ..................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC 2489 37 100.0 35 ..................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG 2417 37 100.0 37 ..................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG 2343 37 100.0 38 ..................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT 2268 37 100.0 37 ..................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC 2194 37 100.0 36 ..................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC 2121 37 100.0 38 ..................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA 2046 37 97.3 36 ........T............................ AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG C [2023] 1972 37 97.3 36 ...............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG 1899 37 100.0 35 ..................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT 1827 37 91.9 37 ...T............A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT 1753 37 97.3 35 ........T............................ GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT 1681 36 89.2 36 ........T....-....A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 1609 37 91.9 66 ......C......C......C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG C [1593] 1505 37 86.5 35 .....A....T...T.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT 1433 37 86.5 36 ........T.T.....A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG 1360 37 86.5 0 ..C.......T.T.......C.C.............. | ========== ====== ====== ====== ===================================== ================================================================== ================== 28 37 97.3 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : AATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5334-5485 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDU01000498.1 Streptomyces acidiscabies strain 85-06 ordered_acidi.568, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5334 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 5395 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 5456 29 93.1 0 ..........................AT. | A [5480] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGTGTTGGCCAGTGGGGTAGATCGAGCCGTGCGCTGCTGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : CCGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGACGCGGTCGTTGCGGGAGAAGGGGTGGATCACGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17016-16743 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDU01000597.1 Streptomyces acidiscabies strain 85-06 ordered_acidi.674, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17015 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 16954 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 16893 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 16832 29 100.0 32 ............................. ATCCCCTCTCGGCCCGCGAGAGGGGTCACGCT 16771 29 79.3 0 ............T........G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : AAGGTGGAACGGCATCGTCTCGTACGTAGTCATGCCCCCACTTTGCCCCACGGATCATCACGAACTGCAGCTGGAGTACTGGCCTCGATTCTTCGGTGGGTTTGGTCGTTGAGTGGCCCGGCGGTTCGCCCGTAATTTCCCTCGCCGTGTGAGGGTGGGCCGTCGCGTGTCACTGCGGAGTGCGCCGGGTTCCACGGGCCCGGAGGAGCGTCTCTGCTGCCGGGGATGTTCGCGCCGGGCTACCAGAGATCGCGTCGAGGACACTCCACCTTCGGCAATCACCCTACGGAGCGGACGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGACT # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //