Array 1 286434-285525 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 286433 35 100.0 41 ................................... TATATATCATACCAGCCCAACCAGTTGGAATTGCTCCAGCA 286357 35 100.0 39 ................................... TTGAAGCAGTTGCAGCCTTTTTGCGAGCTTCTTCTACTT 286283 35 100.0 41 ................................... AGTATGCTGACCAGCGCTCCACGCTTGGTCGATTTCATCTT 286207 35 100.0 40 ................................... GATCGAGTCAGATCTACCCAGCGGGCGCTGAGCGCTTTCA 286132 35 100.0 39 ................................... CCTAACTGTTCGGTTGCTTTTGTGGCAACCTAAAAAATT 286058 35 100.0 40 ................................... ATAAAAGACATATTATGCCTTGTTTGCCCTATCATAGACA 285983 35 100.0 42 ................................... AAATATATTGAGCAACCTACGTTGCATACAATATAATCCAGA 285906 35 100.0 168 ................................... TTTATAAAACCGCCTCTACCTTGAGCAACATCTTGTTGGCGTTGTATAAATGCGGGATGAATTGAGACTTTTATACAAAGCAGAATATTGATTCTTTGCGCCTACTCTTCGAGTTCCGCTTGCAGTATGCGTGATACAAAAATCATCCCACTAATCAGCAACGCCCTT 285703 35 91.4 38 ........A...........TG............. TTCCATTCCAAACCTTCTGTGCCACACATAGAAAAAAT 285630 35 85.7 38 .......G...........CTG........A.... ACTAAAGGATGCTCAACCACCAAGCCTTGAAAATTAAG 285557 33 91.4 0 ..........A...-...............-.... | ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 11 35 97.1 53 GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Left flank : AACTACGAAATTTTCTAGAGGTTTTGACCCGGTAAGTAGAAATATGCGGCAGTTTTAACAAAAGCTTTGCCTTTTGGAGTTTGCTATGGTACTGTTTTTACAAACATCTGCACCTTGAAAATTAAATAAGTACATATAGCGTTTCTCGTTTGTCTGCAATACGTTTTGACTTCTATCCTACAAGGAGACAGGCTTTAAGGCTTACTCTGGAGGTTAAGTCTGTATTAGACTCAACTGCAAACCGCTATATTCTTAACTTGTAATCGAATGGTTAGTTTCGTCAAGTTATTTTATTAAGAAATGTAACCTGAGGGGGTCGCCTAAAGCCTGAAAAGCTTATTATCTCGTTGACCCCCTCAGATAGCTTACCCTATAAGGGTTTGAGTCACCTTGATGATGTAGTTATTGTCAATAAGCGATCTCTATTGACAGGTAAAATATACCCCCCTCAGTTTTACAGTTCTGTAAGTCTTATTTGGTAAGCTTTCTGTAAGTGTAGG # Right flank : AGAAAGACGATCGCCTAAACTATCCAAATATGTAGAGAGACACAAATATTTGTAGGATAGGTAGAGCGATCGCCTTTTAACTAAAGCCTATGCAGATATCATCTTCCGGCTATATCCTAGCGTTGGACTTGGGAACAACTGGAAACCGGGCATTTATCTTTAACAATGCAGGTAAAATAGTTGCTCAAGCATATAAGGAACTAACACAACATTACCCCCAACCAGGATGGTTAGAGCATGACGCGGAAGAAATCTGGCAAGATACCTGCTGGGTGATGAAGACAGCCATCGTCAATGCACAAATATCTCCTAGTGAAATTGCGGCTATAGGTTTGACTGTACAACGGGAAACTTGCCTACTCTGGGACAAAACCACGGGGAGACCATTACATAAAGCCATTGTTTGGCAAGACCGCCGCACGGCTCCCCTGTGTCATCAGTTACAGGAAAAAGGCTATGCTCAGGAAATTTACAGTCGTACTGGTTTAGTAGTTGACGCT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1624430-1623163 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 1624429 37 100.0 34 ..................................... GCTCTTACTGATGCCACATCAATCGCTGTAGATG 1624358 37 100.0 34 ..................................... TGATGTCTAACCCCAGCAATCTAATCGCTGGCGG 1624287 37 100.0 36 ..................................... GAATCTTCACCCACCCCCCCCCATCCCGCAAAAAAC 1624214 37 100.0 40 ..................................... TGTTTACTTAGCAAAGAATAGCTTAAATACTTTTGCTATG 1624137 37 100.0 34 ..................................... AAGAGAAGAGGCAAAGTGAGCCACCCCCCTAGCA 1624066 37 100.0 36 ..................................... ACCCTCAGCCTCTCTATCACGCAATCCAAAGCTAAA 1623993 37 100.0 34 ..................................... TGACTGTATTAGACGATTTGCTGATAATGTGTGT 1623922 37 100.0 175 ..................................... CAGACTCATTGATTACAGGTGATCGCTTCTTGTGTTTTAACTAACAAAACGCCGTGTGCAACTTTCTCCCAGACCTAACCCCCAACCCCTTCCCTACAAGGGAAGGGGAGTAATAATTAAAGCCTCTCTCCTTGCAGGGGAGAGGTTTGGAGAGGGGTTTTAAGAATAAGTCGCA 1623710 37 81.1 44 CA.CGCGT............................. TCGCTTATACAACAAAGGGATCTTCTTCAATGTGTGGAACGAAG 1623629 37 100.0 34 ..................................... TCGCTTATACTGCGTGGGGAAAAACAAGAAAAGG 1623558 37 100.0 36 ..................................... AGGAAACAGCATCAAAAATAAATAATCTAGCCTCAA 1623485 37 97.3 31 ..........................T.......... TGAGCTTTTTTATCAAGCTATCTTCACTCAT 1623417 37 100.0 34 ..................................... TCGCAGGGCAACCCTCAACAACGGAACCATATCG 1623346 37 100.0 36 ..................................... AAGTACAGATTCAAGTTGCATCAGCAGTAGCTGCAA 1623273 37 100.0 37 ..................................... GCTAAAATGCTAAAAAAACAGCAATAACGATTGATAG 1623199 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 16 37 98.3 45 GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACTTATTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATTAGCGTCAATCTATAGGTGTTTTTTTCACAGTACCAAATTTTACGGCTAAAATGCTTATACTGTCATGGCTTGAGTCAGTTTAGCTTCAGTATGAGGTTGACGCGATCGCCTGAACCTTTGCTAGAGTATCTTTTTCGGTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCAGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACTCAGGCA # Right flank : AACTCTTAAAACAACCTGCACCTAAAGCCGCTTTACGTAGGGTTTCAAAAAACAAACCCTGGCTAATTATCTATTTAAAAATAGACGGTAGAATGCTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATATAACTGTAATGACAGCAGTGACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCAACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATAAGTAATATTGTCAACCAAGATATACAAAACCCGTTGATACGCCAAATTAATGGGTTATGAGCTATTTTGCTTAACCGGGGACGGGCGATTTTCTCTACAACCTTGGTGACACGCCGCAGATTTTGGAGGAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAAGCATCTGTACCGATAATATCAGACAGGCAGCA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.90, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1946362-1946979 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1946362 37 100.0 34 ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 1946433 37 100.0 34 ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 1946504 37 100.0 44 ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 1946585 37 100.0 36 ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 1946658 37 100.0 36 ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 1946731 37 100.0 33 ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 1946801 37 100.0 35 ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 1946873 37 100.0 33 ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 1946943 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 36 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : GTGCTATTGTCACACTTGCTAGTAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAACTACAGTTATTAAAGTGTGACCAAGCCCAAGGATATTTGTTCTCCAAGCCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAGATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACGGAAACAACGAGCTAGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTGAATGTAGTTGACACCTTCCAAGGGTTGACGCAAATTCTGAAAACCTTGCTATGACTAATTTCCAGAATTTATTCCCATTGTTCCTCTTGACAACCCAAGGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCTGTAACTAGCC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTCTGCGTGATAGAAATCATCCCGCATTGATGCAACGCGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATAACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATTCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGGTTTTCATGAATGTAGGAAATTGCTTGCCTGAGTTTCCAGTGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATTGTTCCACCTGTTACGCAATAGTGTTTGAGTAGGTGAATACACAGCGTGGTTGTTAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 2468832-2468510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 2468831 38 97.4 34 A..................................... CTGATGAAGAAAAAGTTAGTATCTTTATCCATCG 2468759 38 100.0 32 ...................................... GAAGCGGTGGGGCGATCGCATCCAAAATTTAA 2468689 38 100.0 33 ...................................... TTTGAATATTCAGAACTTTATATTGTGCGCGAT 2468618 38 100.0 35 ...................................... ATTAACAGCTTCTACCAAATCAGCTTGCTCCGTCA 2468545 36 78.9 0 G.................G.....AC-.T...-....A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 95.3 34 CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTATGCTTATAGTCTCCGCCTAGCTAGGCGAAGTTGACAAACATCTGAACCTTGAAAATATAATATGTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGCCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTGATTTGACGCACCAAAGAGAGGTCAAAATTCCGATCTAGGTTCGCGCACATCCTGAAAACCTTATCCTACAAGGAATTTATGAGTAAATTTCTTTTGTAGACAATTCAAAAATTACATCCTGGGAGGCTATTTGATGAGGTTCGCGCAAATCTGCTTCAAAAACCTTGCTAGACAAGCGTTTCATAGAGTGGC # Right flank : CAAATTGGATATGAAACTGCCTTACGTTGTCTGATGGTGTAATTAATTTCCAAGAAGTAGAGGGTTGAAAGCAAATCCCGTCATCGGCTTGTAACTAAAGTTATTCAGGATAAGCTACTCATAGAAGTGATTAAAAGAGCTTTTTGAATGCAAACGCTTATAATAGGGGCTAAATATATAGAGAAACTCCATATATAAATTGTTGCTTTTCCGAAAAATGACAATAATTTGTCACAAATATATATGGAAGCGAGTTACTAAGTTGGATGACAATAATTTGTCACAACGACATCAATTTGTCACCGACGACAAATAAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCTCATAATCCTTACTGAGACGACGGTACTGGTTTAACCAGCCAAATGTTCTTTCTACTACCCACCGTTTGGGCAAAACCTGAAATT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 3753513-3752746 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3753512 36 100.0 33 .................................... TTGTCATCTAGAAATGCAGCTTTGTATGCAAGA 3753443 36 100.0 45 .................................... TTATATTGGTAGAGGCTTTTTTAGCTTCGTTTATATCAATGTGCA 3753362 36 100.0 37 .................................... GCAGGTATTGCTGCTTGCACAACGCTTGCAGTAGTTA 3753289 36 100.0 37 .................................... GTTTTTAATCTCCGAAGGACTAATGCTTGGAGCAGGA 3753216 36 100.0 39 .................................... CGTTCCATCTGCTGTTCGTGCAAAAAGCGATGGTCGCTT 3753141 36 100.0 35 .................................... TCGACGTCCTATTTTCGAGATTCCTCGATAATCAT 3753070 36 100.0 32 .................................... AACAGTCACAAATCCTAGAGTGGCTAAGGGAG 3753002 36 100.0 37 .................................... ATCTTGTAATTTCAGGATATAATGCAAAGATGATTGA 3752929 36 100.0 36 .................................... ATCCGACATCGCTATAGAAATTGTTTCCAGTCTCTC 3752857 36 100.0 40 .................................... CCGATAGCGAATGCCGTTTATCTCCAGGCAAAAGATAAAG 3752781 36 86.1 0 ....T.....G.C.................AT.... | ========== ====== ====== ====== ==================================== ============================================= ================== 11 36 98.7 37 CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Left flank : AAGACAGGCTTTAGTTGATTGGGCGCAGAAAAAAGGAGTGCAAGGAGTTAATGACTATCGAAAGCAAAAAAATGTTGTGAGTATTGATGGTTTACCGACTCCACTCAGCAAATTATTTTAAATGGGTTTTAGTGGGGGATTGGTAATTGGTAATCGTAAAAAGCAGTTACCTTTTACCAACCATCTTGTAGCCAGACTTGATATTCATTGAAATGGGCGTGCAATTGCTCAAAATCCACTGTTTTTGTAACGATTATGTAACAAATTTGACAAAAATGACTAATAAATTTTATTTTAAACACTAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAGGATTTCCGGCTGCAAAATTCCCCACTTCTGAAATTTATTTGATTAAATAAAAAAGTGGTGTCGAATTTGGGGTCTGAAACCCTCTCTATACAAGCGTTGTAGAAGTGAACT # Right flank : TAGCGATCGCACTTTGCGATCGCATTGTTAAATACGGCGGAAATATTATTTACCTATCAATTAGCCTGAGAAAATATCAGCAAAGATGTAATTGCTTTTGCTACAAAGATGATATTTGTCATAAATAAGTAATTGCCGAAAACAGAAAGCATTTACAACAAATGAGAAAGCAATATCTCTAATTGCTTGCGGAAAACACTGAAATGAATACGCGATCTACTGAAATGAGAAAGCATTTACAGCAAATGAATAAGCAATATGTCTAATTGCTTGCGGAAAACACTGAAATGAGAAAGCATTTAAGGCAAATGAGTAAGCATTTAAGCATTTTGCTTTCTCAAACAGGCAAATTATATAGCTGTTGACGGTTGACAGTTGACAGTTGACGGTGAGGCAGTCGCAGTTAGTTAGTAGGTTGGGTGGAACGAAGTGTAACCCAACAAATAATATTGATAAATTAGCAGATTAAACTACAAAAATACCTCAATTTAATAAATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 3760748-3760501 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 3760747 32 100.0 41 ................................ TTTAAGTGGTGGCAGCGCTGCTAGGATTCCTAATAGGTTTC 3760674 32 100.0 39 ................................ AATAACTGGATAGCACTAGCAGAAGGGCTAGAAGGTTTC 3760603 32 100.0 39 ................................ GTATATCAAGCGGGTACAGGTAACTCAGGAAAAAGTTTC 3760532 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 4 32 100.0 40 AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Left flank : TGTTCAGGGTGAAATATCAACAGAATCCCAATCCAGGTAGAACTCAGCACTAAACCAGCACTAATGAGTAAAATTGCGATCGCAATTATTGAGGATGGTTTATAGGATTTTGATGGAGAAATCGCTTTCTGTATCTGGGTTTGATTAATTTTTCCCTCACCTTCTTTTGGCAAATCGGTATTACCTACCTGTTGTTGCTGGATTTGAGGTTTCTTCCCTTCCAAATCAGAGCCGTTTTGCTTAGAAGATTTTGGCGTTAGCTTGCGCGAGCGATTTGCCATGTTATTTCTCTGTTAATTTAAGGTATTAATTTGTGTTTGTTTTTTCTTTTATACTCGCGCTTTGATTAGTTGCCTAGAAGTAGGTGGTTTAATTTTCTACACAAAAAGGATGAGTAGATATTTTGGGCGATCGCCTTTAGGTATTGCTTTGCCTAGCACGTTGGGTTTTCCGCAAAATTAGGGTTGTAGTTTAGAGTACTTACGCACCAGAGTCGTTTT # Right flank : CGCTCGGCTCTCAAAGCCTTGCTGTATTTGGTTTTCAAGGTTCAGTTGCGTGAATTATGGAGCAAAGATAACTTTTCAGACATGGGATTGTCAAGAGGCGCATGGCAAAAATTAACTCAAAAGCTGTTACAGCAAAGGTTAGAGGTAATTGCGTCAACCACAGTTTTAATGTTATGGGCTGTAACCTAATCAGGGTAAGGCATAGAGGCAAGAAACTGAATCTGTGCCGAAAAACATCTATGGGTTGACCGGAAGAGGCAGGGCGAGGCTTGTACAAGCTTCCGTCACGGATTTCCCCCTTGCTCCCTGCCCCCTGCCCCTTTTCCTCTTGCTGACGCAATATTTTAAAAACTAAAGGTGGTACGGATAGCACCGATGAAAATATCATTGTTGCTGGAAATATGACCAGGGTCAGTGACGAGAAAAAAGCCAGGAGTGATGGCGATATTATCATTGACTAAATAGCGGTAAAAAACTTCGTAGTGAGTGGAATTGCCAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 4965912-4968129 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4965912 37 100.0 34 ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 4965983 37 100.0 42 ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 4966062 37 100.0 48 ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 4966147 37 100.0 47 ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 4966231 37 100.0 43 ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 4966311 37 100.0 44 ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 4966392 37 100.0 41 ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 4966470 37 100.0 46 ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 4966553 37 100.0 39 ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 4966629 37 100.0 36 ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 4966702 37 100.0 44 ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 4966783 37 100.0 45 ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 4966865 37 100.0 44 ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 4966946 37 100.0 37 ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 4967020 37 100.0 45 ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 4967102 37 100.0 42 ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 4967181 37 100.0 47 ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 4967265 37 100.0 41 ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 4967343 37 100.0 35 ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 4967415 37 100.0 35 ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 4967487 37 100.0 40 ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 4967564 37 100.0 33 ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 4967634 37 100.0 37 ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 4967708 37 100.0 42 ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 4967787 37 100.0 39 ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 4967863 37 100.0 39 ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 4967939 37 100.0 43 ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 4968019 37 100.0 37 ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 4968093 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.7 41 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TAGAGGAGTCTGTTTTGAATTATCAGTTAGAGAAGCGTTGGCTACCCATACTGAAATTAAGTGAGGACAGTCTCAGGGTTTATCCTCTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAACCACCAGATTATTTAATTTTGTAACGTCTATACTCTGGTGAAAATGATGTTTTTAAAGGCTGAAACGCAAATTTTTACTAGGGCTTGGCAGTTTGTAACGGATTGTAAATGTCACTGCTAATTCGTCGCAGGGAGATATGACAAGCTAGGAAGAATAAATATGTGTAAATAAAAGTAAAGTTAGTAATTTAACCTTGACTACTGGAGTTTATTCGGTTAAATTGTCTATAAAGCTGAATTTTGGTAAAAAAGCTTTTGATTTATCACTACTGAGTGTATAAACTACAATAGCTTTTGCGTACCTCGGCGCAACTGAACCTTGAAATCTAAATATAGTAATAGTTTCCAAAGGGTAGG # Right flank : CGACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATATAGCTGTTACCAGTAGTGTTAGAACATCAATAGATGATACAACCTAGACACAACAAGACTTTTCACCCAGTACCCAGTCCCCAATCCCCAATCCCCAGCTATATGATTGAGCGATCGCCAGAATTTGGATAAAATAATTGACGGGACTATAATTTTGGGCGTTGCATAAATGCGGGATGAATTGAGACTTTTTTGTAAAGCAGAATATTGATTCTACCCTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTTTGCAGACATACTTTAAGGAAATCTCCCCGCTAAATTCCACTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTACCGCAAGCGGAACGCCTGGCGGCGAATGCGTGAGACAAAAATCATCCCACTAATCAGCAACGCCTAATTTTGAATTACCCAAAGAGTGGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 8 6247887-6248141 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 6247887 35 97.1 37 ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 6247959 35 100.0 38 ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 6248032 35 100.0 40 ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 6248107 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 99.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTGGTCGCAATTTGAAAATGTTCGGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATAGTATAGTGCTGCTAGATTATTTAAAGATTGGGCAACATCAGGATGCTCTGAACCTAAGAGATTTTTTCTAATAGTTAAGGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATGCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATACTCTGTTAGCTGCTGGCTTTTCCCTAAGTTGACAGCTTGTTGGGCAATAATTATCGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTGTTTTAAGAGTTTTTTCATCTGCTAGTTCCAGATGTTTGTATATTTTTTAGGTTTGATTTTTCAATCAGTTATTTATTTTATCTAAAATCGTTCATCATCA # Right flank : CCCTACCCTTGTAGAAGCATTACTACGAGAGGGTTTGAAGGGGTCATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATTGATGACTCATGCACCCTATTGAAACCCTTGTACAGTAAGCGATTAGCGGGGGTCAACGAAAGAATCAGTGTTTTGGCGATCGCTCTACCCCCGCTAAAAACTTACGTATGGAAAGTAAAACTAAGCACTTTTGCGTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTTGCTATTGAGCAGTAGTATAACAAACTACTTGAAGTTTTGAACCCTTAAACTATTAACTTTTCTATCATGCAGTAATCATGTAATCTGTGTACCAAATTTGATATTCTCCGCCTCCAGTCACATATTCTAGTAACGCCACCAGATGACTTGCTTCTAATTCCAAAGGGTCATTATCTCCTGGCGGTAGCCAGTCTAATTCAGGTACTTCGTTGGTAAAAACTGCGATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 9 6253392-6252339 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 6253391 35 97.1 36 .............................C..... AAAAAAAAGCCGCATTTAATTTGGCAAATTCCAATG 6253320 35 97.1 39 .............................C..... CGGGCTTGTTACCTTAGAGATACATTAAAATTAAATCCA 6253246 35 97.1 36 .............................C..... TTTTGGTTTACGTTCCTATTGATAACCAGTTTGAAG 6253175 35 97.1 35 .............................C..... CTGAAGAGATTGAAAGACTCAAACGCCAGGCCGAA 6253105 35 97.1 39 .............................C..... CGTTTTGTTGCTCGCATTATCGTTTCTTGCATTTTATTG 6253031 35 97.1 40 .............................C..... TTACAAACTTTTTCTATCCACCAGTTCCGTTTTTTATTAG 6252956 35 100.0 39 ................................... CTAGTTGGTCCGCTTTCAAGCCCAACAAATTATGATAGT 6252882 35 100.0 38 ................................... ATAATAATTTTCTTTATATATTTCCTTGTCTTTTATTT 6252809 35 100.0 35 ................................... AGAAATTTCTATCGGAGGTGTAGGCGCACAATAAA 6252739 35 100.0 34 ................................... TGGTGGAACAAGTTTTGTCGGAATCGGTGAAAAC 6252670 35 100.0 39 ................................... ACTCTCCGCTTTGCTTGTTGTTGCCATTAAGGCACAAGA 6252596 35 100.0 39 ................................... TATATCTAGAATTCCAGGAATAAATTTTCTAGGAAGCGT 6252522 35 100.0 40 ................................... ACATATAATCGATGCAGAAATTCAAGCTTTTCTTAGCAGT 6252447 35 100.0 39 ................................... CTTTTTAATAAGTTAGACCCAAACACACAATTTCTGATA 6252373 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.8 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AATCTGTAATTTTATTTTCTACTTCTCGGTTAATTAATTGACTGGCTAATTTTTTCGCATCATCTAAATTTTTACCTATAGCAAAGGCTAAAAACCCACCCAAAAATGCAAATACTACTAAGGTAAATTGCATTGCAGCAACAAATCTGTTAAAGCTTTCACCTAGTTGACCATTGGTAGCCTTGAGAAATTCTAACTGGCTTTTGAGTAGTTCAATATCATTGATATTTTTTGCCGGATTTACCACTGGTGAAGGTGTGGTTGTAGGTGTTGGAGTTTGGGCAATAACTAAATCCCAAAGGTGGGATAAATCAATTGTAGGTAGCCAATCCATAGGTATTTTGTTGATGGCGATTACTTCTCTATTTAATCATGTGCGATCGCCTGCATTATTTTATTCCAACTTTAACTTAAGCGATCGCAACTTCCCTTAAGTTTCAATAGTGGTTTTACTGTGCGATCGCATTACATCACCGCTACTAAATCCCGCTATTGATTAT # Right flank : CCTACCTGTTCAGAAGCCTTGCCACGATTGAGTTTGAGATAGGTCAATCTGAGGGGGTCATTTTTTCAGCCCAATAATTGATAAACTCTGTCAATAAACCACTTTCTAATGAGCCTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCGTTGCCTGACCCCCTCAGATGCTTATCATTCAACAAAAAACTATAAGTTTGCCAAATGAATCAGAGTAAATGGAAATACTTAATCTAAGTATTATTAACTTTTCATGGTTCAAAAACTCTGATGATCAGTGTATAGAAACCTACTAAAAAAGTCAAGGTGAAGCATAAAGTATAAAATTACGCTCCCTTCCTTCCCCTTTTAAGCCTACTGTGTACACACAAGCCCACGAGATGTTCCCTACGGTTAGGCTTATACCATTTCACTAAAATTCTGATACAGATCCAAATCCAGAAACCTTTGCAAAATATAGGTTTCTTAATTTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 10 6356883-6357793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018216.1 Anabaena variabilis NIES-23 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6356883 37 100.0 37 ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 6356957 37 100.0 35 ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 6357029 37 100.0 33 ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 6357099 37 100.0 35 ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 6357171 37 100.0 35 ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 6357243 37 100.0 35 ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 6357315 37 100.0 41 ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 6357393 37 100.0 34 ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 6357464 37 100.0 39 ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 6357540 37 100.0 33 ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 6357610 37 100.0 37 ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 6357684 37 100.0 36 ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 6357757 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAAGTTCTCAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGTCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATTGGCGGCGAAATGCCAATAGACACCACCGTATTTTTTGCTTAACTTGTGCGTCAACCTATAGGTGTTGGGCAAACACACTGAAATTTATCGTCCCAAACCCTTCCCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCCTCACCATAAATACTTTTGCACCAATTTTCTCCAATTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTCCACACCTGGGCG # Right flank : CATCAGATGCGGTAAACTTAATTGTCAGATTTTCAGCTTTATACCTTGCTCTCTTCGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTGTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACATCTCGCTGAATAATCTCTTCTACTTGATTGGCAAAGTTACTAAATGCTTTATCGTGGGTTTCATAATTCACATAAGGCCCAGTTAATTGAAAGAATTGCCAACCTTGTGTTTTCAAAGATTCGGCCGTGCGGCGATAGTGTCGCCAGCGTTCTCCATAGTGGAAAAATTCTTCAACAGCTGCGCTAATTGCTACAACTTGGCTAAGGGAAAAAGTAGCCCAAACAAAAATTTCCCGCACCTGAGAACTGTTAATATTGAGACTTACCAAAGCGGGTAGAGCTACACCACCAATAATTGTGACCAATCGTAATCTGTAATATCTATTCCGTGATTTACCTGCTTGTCTTTCCATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //