Array 1 27791-27396 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBR01000036.1 Vibrio cholerae VC35 Contig036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27790 28 100.0 33 ............................ CTCAAAGCTCTCTGATTTGGTTCAATCCACGCT 27729 28 100.0 33 ............................ TATCGCCACCATTGTTTTAGTGAGTGGTATGCG 27668 28 100.0 33 ............................ TGCTAGAGCACGTCGAAGATGCCATCGAAATCA 27607 28 100.0 33 ............................ CGATTGCAGCCAGTGTTAGTCAGCCAAGTCACG 27546 28 100.0 33 ............................ CAGAGAGTATTGACGAGCAAGGTCAGCCACTTC 27485 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [27463] 27423 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.9 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : ACGCAGGTGGGGGTGTTTCCCCGCTATTTTGGGACGCTCTTCATGACCGATG # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 814-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBR01000007.1 Vibrio cholerae VC35 Contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 813 28 100.0 33 ............................ TTACCGAACGCGTAAAAGCCGTGTCCGCAACAC 752 28 100.0 33 ............................ CCAACTTAATCCGCTCATCAAAAAACTGTCTGA 691 28 100.0 33 ............................ TATCAAGTCGATTTTAAATAACAATCAGGGTGT 630 28 100.0 33 ............................ CCTGGCTGCAAGTGCGTCTCCACGTTCTTCTTC 569 28 100.0 33 ............................ CAAAGAAGTTACTCCGCCAGTTATCAAGCTGAA 508 28 100.0 33 ............................ CAAAGTTTGGGATCACCTTCTTGGTGTAATCCG 447 28 100.0 33 ............................ CGCGAAGCGGTAAAGGTGTAGGCATTGTGATAC 386 28 100.0 33 ............................ CATTTGAAGAACACGAGTATCTATACAGATCTC 325 28 100.0 33 ............................ CATCTAAATTTCCCCCTAGCTTAAAACTTCAGC 264 28 100.0 33 ............................ TATTCGCCGCCGAGACGGCACATTTACTCGCAA 203 28 100.0 33 ............................ CAGTAACGACGCCATGAAGTTGCGCGCCATGAA 142 28 100.0 33 ............................ TAACAATTCGCCGTTTTTACCCCAGTTTGAGAT 81 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CCGTTAGGTTCTGCGATCACTAAATTGATAGTTTGTCTTCCCCACGCAGGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //