Array 1 29514-31881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAIG010000003.1 Legionella pneumophila subsp. fraseri strain Los Angeles 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29514 28 100.0 32 ............................ AGTACTTGATTGTATATCCATCAAAGCTCGTT 29574 28 100.0 32 ............................ GGTCATTTTCCCCTATTGCTGGGTCTACTCCG 29634 28 100.0 32 ............................ CGTAACCCGGTGGAAGGTAGTCCCTTCATGGC 29694 28 100.0 32 ............................ TCAAGGCGGCACGCCATGTTGCCCCTCGGCAT 29754 28 100.0 32 ............................ AGATAAGTATCCTTGGACTCGTAGGAATGGTA 29814 28 100.0 32 ............................ AACTTACGTTTACCATTAGCAGTCAATTGAGC 29874 28 100.0 32 ............................ TTGGCTAAAAAGATTTTACGTAAGCGATCTGA 29934 28 100.0 32 ............................ ATTGACAGTCAGTTGAGCAGAACGAAAACCTT 29994 28 100.0 32 ............................ AGATAATCCTTCTGATTACGTCCTTTTGAGGC 30054 28 100.0 32 ............................ TACCATTAATAACAACAAAATCACCATTATAG 30114 28 100.0 32 ............................ TACTGGTGATGCTGCTACTGGTTCTAATTGGA 30174 28 100.0 32 ............................ TTATGGTTCACTTAATATTAAGCATTTTCAAG 30234 28 100.0 32 ............................ TGATAATCCTGCTGATTATGTCCTTTTGAGGC 30294 28 100.0 32 ............................ TCCAGTTGATAGAATTAAGGCTCTTGGTGATG 30354 28 100.0 32 ............................ ATCATACGTTGATATGATGTATTAGACATACG 30414 28 100.0 32 ............................ ACAAGCAAATTTGGCTGCTTTTGGTACTGCTA 30474 28 100.0 32 ............................ TCATTCAATTGGTGTTGCTATTGAGTTTTTAA 30534 28 100.0 32 ............................ CAAACAAGTCGATAAGGAACAGCAAAAAAGAA 30594 28 100.0 32 ............................ TCAAGATAAACAGAATCACCTTTCTGGTAAGA 30654 28 100.0 32 ............................ TATTGAAGATATGAGGCCTGAATTTGAAGGTG 30714 28 100.0 32 ............................ AACAAGCTCAGGAATTAAACCTGCTCTAACAA 30774 28 100.0 32 ............................ TTTTGGGGATTGTATGTCGGCAATTTATGGTA 30834 28 100.0 32 ............................ TTTCAATGACGTATACACACAAATATGGGCTA 30894 28 100.0 32 ............................ ATATACTAGGCCATCACCATATACTCGGCCAT 30954 28 100.0 32 ............................ AGCAAATATGAAACTAACACCAGAAAATTGCT 31014 28 100.0 32 ............................ CCAGTCAATAGCCTTAGCCGGCTTTCCATTGT 31074 28 100.0 32 ............................ TTATGGACGTTAAGGTTGTAAAGGTATTTTAG 31134 28 100.0 32 ............................ TAATGATTTATTAATGTTGTTAATCTCTTTAA 31194 28 100.0 32 ............................ TGTGATCAGCGATTATGAGGTAGTAGCAAAAA 31254 28 100.0 32 ............................ TTACGTTAGAGTAGTAAATGACGAGAATATAG 31314 28 100.0 32 ............................ AAGTACATCGTCAGCCTCAACTCCCTCTGTTA 31374 28 100.0 32 ............................ TAAAAGTGTCCTTAAATAAAAAGTAATTGTTT 31434 28 100.0 32 ............................ ATCTGTCACAACAATAATGGATGTTGCTGCAA 31494 28 100.0 32 ............................ AGTAAGAATAACGGAACGAATTTGTTTCCCGA 31554 28 100.0 32 ............................ TGAACAATCATTCCCCAAGGTTTTCGACTATC 31614 28 100.0 32 ............................ GCCAGCGAGTCTAACGATATAGAAAAATTAAA 31674 28 100.0 32 ............................ TATAAATTTAATACATAAGACAGTTAACCAGT 31734 28 100.0 32 ............................ GTTGGGCGTTGTTGGTACAACTGAGTCACCTA 31794 28 100.0 32 ............................ AAGCTTTTTTAAACTATTCTGTTGACGGGTAT 31854 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : ATCCAAAATGAGGAGATTAGTTAAACGTGGTTCTATAACGGAAAGTGAGTTTCGACAATATAAAATTAAAATGTTTTCCAATGGTTTGGATTATCCATATGCTGAACTGGTAAGTAGTTCAAACGGAAAAAGATACCGCCGATATATTGAGTTTGGAGAGCTGCTCGATAAACCAATTTCTGGCGATTTTGATCAGTTTGGTCTTTCCAAAACTGCTACAGTTCCTTGGTTTGATTAGAAAAGAGGAATTGGCAAATCTATTGAATTTGATCAGTTTAAGAAGAGAATTTTGGCTAAGTCAAATATTTTAGTCTTTTATGGAATTAAAATAAAAAATAGTCTAGGCTTGGCTATTCTCAACTTCCAAATACTAATAATTTTGGTTCCTTAAAAATTTGTTTTAAAATCAGATGATTATAACTTGATTGAAATACATTGGGTGACAGAGTAGTTTGCATATAACTTTCTGTTTTTTCTGTTTTTTTATAGTTTATAATCGA # Right flank : GTATCTGCACCGTACAGCAAGCGTAGGTCGGGCCAAGGCCCATAGCCGTCAAGCTAAGGAGAACACATCAAAAATTTTCTGCATTAAAAAGGGGGGCACAGTTCTTAATTTTAGTATCTTTGTTAGCGAAAAGAGCCAAGCTGTCATGGAAACTCTTAAAGAAAGTGTTTTAAACGGTAAGGAGAATTCCAAGCTCGAACAAAATCGTTGAGTTTGGTTATTAACAATTTACACGCCTTATAAAAGGAAACTTCTCTATTATTTTGGTATCGAACCGGGGCGCATAGTAAAAATAAAAACATCATCCCAATAAACTTGCCATAGGTCTCGATGACTACGCGTGCGGATTTTGTAGTACAAATACAATCAATATGCATTAATGATTTACTTAGTTTAAAGACTAATTCAATTTGCCATCGCCAAGAATAACACTTGCATATCTCCTCATTGCCTATTTGTGTTTCAGATGTGTTGGTAATATAAATGGACCAATCTTGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //