Array 1 133622-133786 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992777.1 Clostridium sp. KLE 1755 Scaffold932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 133622 32 100.0 34 ................................ ACCATTCCTTTTCGGTGCTTCCGGCTCAACGTAT 133688 32 100.0 35 ................................ GTTATAGCAGTGCCATCCAATGTAAGGGAAGCCGG 133755 32 90.6 0 .............................NNN | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 35 GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Left flank : TGGGGCGGTGTTTATCAGAGCAGAAAAAGAAATGCTGTGATGAGATGAAAAATGTGTAACGAGGAATGAGAAGTGTACGGCTGATTTGGAAGAAGCAGCGAGGAGGAGAGAAAGGATGCGGCAGTAAGGAAGGGGAGGGGGTGCGAATCGGAAGTGCACATGAATTTACCGGGGGATTCGCACCAGTTTTTTGTAAATAGTAATGGGTTTGGTAAATATATTGTAATTATATAGTGATAAATTTTTAGAGAAGTTGTATAATAGTGTCGTTGAGATAGTGGTTTGAAAATATTTGTTGTATGTTTTTGCTGTCGAGGCTTATGTGGCCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATGTGGCCTCGTGGATTGAAATATACGCCGCAGACGGCACTTTCCAATGGGGAGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTTATGTGGCCTCGTGGATTGAAATCCAAAGACCAGGCTGAACGGAACCGCGTGGCTACGTCGAGGCTTATGTGGCCTCGTGGATTGAAATACTTTCTGCAGTGAAAAAATAAAATCTTCCAGTACGTCGAGGCTTATGTGGCCTCGTGGATTGAAATATCAATATTGTTAAATTCTACAGCGATTAAGCGCGTCGAGGCTTATGTGGCCTCGTGGATTGAAATGAAAGAAAAGTTTGATTCTTTCAAGGCTGGCGTAGTCGAGGCTTATGTGGCCTCGTGGATTGAAATACACTCCGTAAAACTGCAAATAAGCCAAACCTACGTCGAGGCTTATGTGGCCTCGTGGATTGAAATAAATCCTCATTTAAACTATTTTTGGTACACAATAGTCGAGGC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 133947-134309 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992777.1 Clostridium sp. KLE 1755 Scaffold932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 133947 32 100.0 35 ................................ ACTTTCTGCAGTGAAAAAATAAAATCTTCCAGTAC 134014 32 100.0 34 ................................ ATCAATATTGTTAAATTCTACAGCGATTAAGCGC 134080 32 100.0 34 ................................ GAAAGAAAAGTTTGATTCTTTCAAGGCTGGCGTA 134146 32 100.0 34 ................................ ACACTCCGTAAAACTGCAAATAAGCCAAACCTAC 134212 32 100.0 34 ................................ AAATCCTCATTTAAACTATTTTTGGTACACAATA 134278 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Left flank : GCCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATGTGGCCTCGTGGATTGAAATATACGCCGCAGACGGCACTTTCCAATGGGGAGCGTCGAGGCTTATGTGGCCTCGTGGATTGAAATACCATTCCTTTTCGGTGCTTCCGGCTCAACGTATGTCGAGGCTTATGTGGCCTCGTGGATTGAAATGTTATAGCAGTGCCATCCAATGTAAGGGAAGCCGGGTCGAGGCTTATGTGGCCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTTATGTGGCCTCGTGGATTGAAATCCAAAGACCAGGCTGAACGGAACCGCGTGGCTAC # Right flank : TTTATGTGACCGGCGGCCCTGTTCTTCCTGGCACGGTCGAGGCTTATGTGGCCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATGTGGCCTCGTGGATTGAAATGAGATAATCACCTTCAATGACTCCATTATAAACGTCGAGGCTTATACGGCCTCGTGGATTGAAATAATAGCAGTGTCCTACATGACCACCAGATCCGTCGCGTCGAGGCTTATACGGCCTTATGGATTGAAATAGTTGCTTTGTGACATATTCATAGGCCATAACAGGTCAAGGCTCATACCACCTCAAATAATCTTTTAACCCGCTATCCATCTTCCCCCTTTCAAGCGCCGCTTGAACCCATCCCTGCATCCCTTTCAAGCACTTCTTGCTTTCACGCCCACCCGAAAAACAGTATAATCAAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTGGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 160242-160407 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992777.1 Clostridium sp. KLE 1755 Scaffold932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 160242 33 100.0 33 ................................. ATCGGTGGTCTGGGGGAATACCTGGAGAATAAT 160308 33 100.0 34 ................................. TTGAAGAGATTTGAATCTGTGCGGATAGCGAAAG 160375 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGAGGCTTGCAAGAGCCTCGTGGATTGAAAT # Left flank : CGTCAGGGCGTTGCATCCGCATTGATTTCGGAAATGCTCCGGCTTATGCCGGATGTTGATATCAGCGTTACGACATACCGCGAAGGGGATGAAAAAGGAATTGCACCAAGAGCATTATATCAGCGGTTCAATTTTGTGCCGGAGGAACTGTGTATGGAATTTGATTATCCGGTACAGCGGTTTGTGCTGCACAGGTCCCGGAAAAATTTGAACTGAGGTGGCCTTGGTAAGTTTGATAATCATTTTTCTGTTGGCCGGGGGAGCAGAAAGATTAAATAATTATTTGTGTGTATTCCTACATGTGTAAAATGGGGTTATAAATTTGGGAAGGTGCGAATTATAAGTGCACATTATTTCGCCGGGAGATTCGCACTTGAAAATTGGCAGTATGGAGATTTATGCAAATAAAAAGTAATATAATAATGACAATTTTTTAGAAGAGTTGTATAATGAGGATGTTATTACTTGGCTTTATAAGATAGATGTTGTATAGTATTGCT # Right flank : TATAAGCAAAAATGATTTAATGCATCACTATGGATGTCGAGGCTTGTAAGAGCCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTGTAAGAGCCTCGTGGATTGAAATAATCTGCTCGCAGACCTTGAGGATGACGAACTTGAGTCGAGGCTTGTAAGAGCCTCGTGGATTGAAATCGCATCTTCTGCACGCTTATTGTCGTTTGGTTTAGTCGAGGCTTGTAAGAGCCTCGTGGATTGAAATGGTACCTGCGCCAGCAGCGGGCGCGCAGTCAAAGTCGAGGCTTGTAAGAGCCTCGTGGATTGAAATACCATAGGGAGAAAGTTAAAAAGGAATTCTTTTCGTCGAGGCTTGCAAGAGCCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTGCAAGAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 160567-160867 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992777.1 Clostridium sp. KLE 1755 Scaffold932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 160567 33 87.9 35 NNNN............................. AATCTGCTCGCAGACCTTGAGGATGACGAACTTGA 160635 33 100.0 34 ................................. CGCATCTTCTGCACGCTTATTGTCGTTTGGTTTA 160702 33 100.0 33 ................................. GGTACCTGCGCCAGCAGCGGGCGCGCAGTCAAA 160768 33 100.0 34 ................................. ACCATAGGGAGAAAGTTAAAAAGGAATTCTTTTC 160835 33 87.9 0 ...........C..................NNN | ========== ====== ====== ====== ================================= =================================== ================== 5 33 95.2 34 GTCGAGGCTTGTAAGAGCCTCGTGGATTGAAAT # Left flank : GGAAGGTGCGAATTATAAGTGCACATTATTTCGCCGGGAGATTCGCACTTGAAAATTGGCAGTATGGAGATTTATGCAAATAAAAAGTAATATAATAATGACAATTTTTTAGAAGAGTTGTATAATGAGGATGTTATTACTTGGCTTTATAAGATAGATGTTGTATAGTATTGCTGTCGAGGCTTGCAAGAGCCTCGTGGATTGAAATATCGGTGGTCTGGGGGAATACCTGGAGAATAATGTCGAGGCTTGCAAGAGCCTCGTGGATTGAAATTTGAAGAGATTTGAATCTGTGCGGATAGCGAAAGGTCGAGGCTTGCAAGAGCCTCGTGGATTGAAATATAAGCAAAAATGATTTAATGCATCACTATGGATGTCGAGGCTTGTAAGAGCCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTGCAAGAGCCTCGTGGATTGAAATTTCTCTTGCTTTTCTGTTACTTTCCTGCCACTCCGGTCGAGGCTTGTAAGAGCCTTGTGGATTGAAATCCTTCATTAATGAAACAATCTGCCCAGACGCTGCCAGTCGAGGCTTGCAAGAGCCTTGTGGATTGAAATGATTTTGTAATAGGTGTATATCCACCACTACAATGTCGAGGCTTGCAAGAGCCTCGTGGATTGAAATGGACTATATGGATAATCATGAAAAAAAGTAAATACGTCGAGGCTTGCAAGAGCCTCATACATTAAGATATACAGTCTCACATACCTATAATAAAAATGGAGGAAACAGGTAATTAATGAAGGAGCGAATAAAAACTATAGTTTTCTGGATTTTGCTGGCTTTCACTGCAG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTGTAAGAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992763.1 Clostridium sp. KLE 1755 Scaffold809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 59 34 100.0 32 .................................. ACAAAAAAAATATATAGGCTCAAGAAGGGCAT 125 34 94.1 33 A........G........................ GCCTCCACAACCTCCCCGGTGCTTACCCGAAGG 192 34 100.0 32 .................................. ACGGTATCTGGATACACGGCGGCGGAGATACT 258 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================= ================== 4 34 98.5 33 GGTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Left flank : TCTGTATAGAGGAAGTGGATTGAAATATTCTCCTTCTGACGATATTGCTGAGTCTTCGG # Right flank : TACACTGACAGTGGGAGACAGTGCAGCGTTCGGAGTCTTCCTCTGTATAGAGGAAGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATAGAGGAAGTGGATTGAAATATGCCGCAGACCGGAAGGGTCCGGTACATCCTGGTCTTCCTCTGTATAGAGGAAGTGGATTGAAATATCCTATCAAAGGAATCCTTCTTACTCGGAAATGTCTTCCTCTGTATAGAGGAAGTGGATTGAAATGGTGCAGTCTATAAGTTATTCATGGCACACAGCGTCTTCCTCTGTATAGAAGAAGTGGATTGAAATTTTGTTAAACCGAACCTTATGCAAATGTACAGTAGGTCTTCCTCCGTATATAGGAAATGTATTTAAATTATGGCTCACCGAGCTCCCGGGTATCCAAGGAGCCCATTATCTGCATA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 2 510-742 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992763.1 Clostridium sp. KLE 1755 Scaffold809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 510 33 100.0 33 ................................. ATCCTATCAAAGGAATCCTTCTTACTCGGAAAT 576 33 100.0 33 ................................. GGTGCAGTCTATAAGTTATTCATGGCACACAGC 642 33 97.0 35 .................A............... TTTGTTAAACCGAACCTTATGCAAATGTACAGTAG 710 33 84.8 0 .........C.....T.....A..T...T.... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 95.5 34 GTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Left flank : AGGAAGTGGATTGAAATATTCTCCTTCTGACGATATTGCTGAGTCTTCGGGTCTTCCTCTGTATAGAGGAAGTGGATTGAAATACAAAAAAAATATATAGGCTCAAGAAGGGCATAGTCTTCCTGTGTATAGAGGAAGTGGATTGAAATGCCTCCACAACCTCCCCGGTGCTTACCCGAAGGGGTCTTCCTCTGTATAGAGGAAGTGGATTGAAATACGGTATCTGGATACACGGCGGCGGAGATACTGGTCTTCCTCTGTATAGAGGAAGTGGATTGAAATACACTGACAGTGGGAGACAGTGCAGCGTTCGGAGTCTTCCTCTGTATAGAGGAAGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATAGAGGAAGTGGATTGAAATATGCCGCAGACCGGAAGGGTCCGGTACATCCTG # Right flank : TTATGGCTCACCGAGCTCCCGGGTATCCAAGGAGCCCATTATCTGCATAGAAGAAGAGTATAGAAATCAAGTATATTTAGGAAGTGAGAAATTTAATTGACAACCGTTCGCTTTCACTGTATATTATTTATCAGATTAGTTCTTTTTAGAACAAATCAACATATAAAAAACTACTGGTATATGCCGCTATCCGAAGCACTGTTTTTCCTGGCTAATGGAAAAATTCTGATATGCCTGGGAAGGCTCATGATTTGTTATGAAAGTCATCGAAAGTTATTTTATTTAAAGAGAGGACAGTATCTGAGACTCCAACCTTGAAATGCTATTATATTCAAGGCCGTTACAATAACTCAATTACTGCCAGCGTTAGGAAAAAGCCTAAGGTTTCACAGGTATACCAGATACCGCTACCCAGCCAGGACAGAAGAATGCTGTATTTGGCGGCATCCCTCCGGGCAGCCACAATATAACTATTGAAAGGGGATTTTATCTATGAAAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCTCTGTATAGAGGAAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 140702-140924 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992782.1 Clostridium sp. KLE 1755 Scaffold980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================= ================== 140702 31 100.0 33 ............................... GCTACAATCTTCCCATTGTTAAAAATTCTCGCT 140766 31 100.0 33 ............................... GTCTGCAGAGGAACTTAGAGCGGTTCAGTCAAT 140830 31 100.0 33 ............................... TTCACATTCTTCCAAAGGCTCCTCAACCTCTTC 140894 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================= ================== 4 31 100.0 33 GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Left flank : ATAATTCAGTGTGTATAAATGGTGAAAAATTCTGCTAGTGTGTGGATAGCTGGGAATTTTTGCAGGTAAGATTGGGGAAAATGGGTAGTGAGGATCTGAAACTTAAGCGGCTAAGGTGCTTTATAGGGAAAATGAGAGTTAGTGCGAATATGAAGTGCACATGAAATCCCCGGGGGATTCGCACCTGGAAAAGACTATGTTTTGTTTGAATATGGATTTAAAATTGAATAAAAGTAAGCTGGGTTAGTTTTTTATGTGTGGAATGTATAGAGAAATGGTGATAGAATGATTAGTAGTTGTTTAGTTTTGCTGTCTCGGTCTTGCGACCGAGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCTTGCGACCGAGTGGATTGAAATAAATTCTGATTTAACAACTTAAGCTGCCGGCTGC # Right flank : TGACTATGAAATTATTGAAGAATGGACACTCATAACGTCTCGGTCTTGCGACCGAGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCTTGCGACCGAGTGGATTGAAATATTCCCGACATAGCATCACTCCTTTGCTGTAGCGTCTCGGTCTTGCGACCGAGTGGATTGAAATGCAGATGGCCGCGTCGTGTTGTTTAAATTTCTGGTCTCGGTCTTGCGACCGAGTGGATTGAAATAACCTTATTGTCAACAGTTCCTTTGGATATCCTGGTCTCGGTCTTGCGACCGAGTGGATTGAAATACTAACATGTCTGTATCCTCCTTATCCGATCTGGTCTCGGTCTTGCGACCGAGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : NA // Array 2 141147-141308 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992782.1 Clostridium sp. KLE 1755 Scaffold980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 141147 33 93.9 31 GC............................... GCAGATGGCCGCGTCGTGTTGTTTAAATTTC 141211 33 100.0 32 ................................. AACCTTATTGTCAACAGTTCCTTTGGATATCC 141276 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================ ================== 3 33 98.0 32 TGGTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Left flank : TGCGACCGAGTGGATTGAAATAAATTCTGATTTAACAACTTAAGCTGCCGGCTGCGTCTCGGTCTTGCGACCGAGTGGATTGAAATGCTACAATCTTCCCATTGTTAAAAATTCTCGCTGTCTCGGTCTTGCGACCGAGTGGATTGAAATGTCTGCAGAGGAACTTAGAGCGGTTCAGTCAATGTCTCGGTCTTGCGACCGAGTGGATTGAAATTTCACATTCTTCCAAAGGCTCCTCAACCTCTTCGTCTCGGTCTTGCGACCGAGTGGATTGAAATGACTATGAAATTATTGAAGAATGGACACTCATAACGTCTCGGTCTTGCGACCGAGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCTTGCGACCGAGTGGATTGAAATATTCCCGACATAGCATCACTCCTTTGCTGTA # Right flank : TACTAACATGTCTGTATCCTCCTTATCCGATCTGGTCTCGGTCTTGCGACCGAGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCTTGCGACCGAGTGGATTGAAATATGCACGATAAACTTATTATCCGGAAGAGGAAGTCTCGGTCTTGCGACCGAGTGGATTGAAATACTTATAATACTTTGACAACTGGTGGTGTCGGTGTCTCGGTCTTGCGACCGAGTGGATTGAAATAATTCAGCAGTAGGCGTTTTGCAGACCCTTGTTGGTCTCGGTCTTACGACCGAGCAGATAGAATAAGTATTAATATAATGTTGGATTTCCCCTGTTTTACTCGTTCTAATAAAGATACGCACATAGCAGTCCTCACAATTTATCCCTGCTTGTGTTATACTCCAACACACTTAAATGTTTATTTC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 141465-141686 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992782.1 Clostridium sp. KLE 1755 Scaffold980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 141465 31 90.3 32 NNN............................ ATGCACGATAAACTTATTATCCGGAAGAGGAA 141528 31 100.0 33 ............................... ACTTATAATACTTTGACAACTGGTGGTGTCGGT 141592 31 100.0 34 ............................... AATTCAGCAGTAGGCGTTTTGCAGACCCTTGTTG 141657 30 83.9 0 ...........A........CA...A.-... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 93.6 33 GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Left flank : GGTCTTGCGACCGAGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCTTGCGACCGAGTGGATTGAAATATTCCCGACATAGCATCACTCCTTTGCTGTAGCGTCTCGGTCTTGCGACCGAGTGGATTGAAATGCAGATGGCCGCGTCGTGTTGTTTAAATTTCTGGTCTCGGTCTTGCGACCGAGTGGATTGAAATAACCTTATTGTCAACAGTTCCTTTGGATATCCTGGTCTCGGTCTTGCGACCGAGTGGATTGAAATACTAACATGTCTGTATCCTCCTTATCCGATCTGGTCTCGGTCTTGCGACCGAGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAAGTATTAATATAATGTTGGATTTCCCCTGTTTTACTCGTTCTAATAAAGATACGCACATAGCAGTCCTCACAATTTATCCCTGCTTGTGTTATACTCCAACACACTTAAATGTTTATTTCTATAAAAAGATACAACATATACTAATTCTATTACATTTGTAAAACAACTAAATAATAAACAAATCAATTAACAGGAACCCCAAAAATGAAAGCACCTGAAATTAAAAAAATTGTAGAAAACAGATTCCAGGAACTTGGAGCAAGCAAAATTCTTCTCTCTCCATCAGATTATTGCTGGGAATTCCAAGGTGAATTTTACAAGATGACGGCCTTATCTGATTTTTGGATAATAGAGTGGACCAACAATCCTTTTTACGCACTTAATCAATGTTTTGAAGATGTGGATCCCATGCAATACGATTTATTAGAGCAACAAATAATTGAATATATTAATAAACTGCTGCAGCATTAATCAAAAAACCGGACAATTCAAGTTTA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 10881-10194 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10880 32 100.0 33 ................................ GTATCCGATTGCCTCTATATCTGCTGTTGTCAG 10815 32 100.0 33 ................................ GCAGATGATGAACATTATCAACTTGGTGACTGG 10750 32 100.0 34 ................................ ACAGCATCTATATTGCCATCCAAGAAATATCTAT 10684 32 100.0 34 ................................ TCGTTACCGCTGATTTGAAAGGAGAGAAAAAGAT 10618 32 100.0 33 ................................ ATATTCCACCTACTTCTTCCGTGGCCATACTGC 10553 32 100.0 33 ................................ ATCCGCCGGGTTTCGCTGCCGTATTCTATCATC 10488 32 100.0 35 ................................ TGTTGGATAACAGGTCCCTGTCTTGCATCCATACC 10421 32 100.0 32 ................................ AATCGTAACTGTCTTGTGCATCTCCATCACCA 10357 32 100.0 34 ................................ CTGCAGGCCCTGTCGGCCCCTGTGGACCTGTATT 10291 32 100.0 34 ................................ TCTCTATATAAGGCGTTAAGAGCCTCATTTTCTT 10225 32 71.9 0 ..............AT....A.A.C...TTTA | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.4 34 GTCGAGGCTTATGTTGCCTCGTGGATTGAAAT # Left flank : TCGTGGATTGAAATGTATCCGATTGCCTCTATATCTGCTGTTGTCAGGTCGAGGCTTATGTTGCCTCGTGGATTGAAATATGGATTCTTGGAGTTAAGGAAAGCTGACTTTGGTCGAGGCTTATGTTGCCTCGTGGATTGAAATATGATTGCTTAGTTTTTATCGTTAGGCGGTTCAAGTCGAGGCTTATGTTGCCTCGTGGATTGAAATACCGCGCTTGCAGATAATGTTGTCTTATTACCATCGTCGAGGCTTATGTTGCCTCGTGGATTGAAATATCATTCAATGTAATATCTATGCAGGCTATATCAGTCGAGGCTTATGTTGCCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATGTTGCCTCGTGGATTGAAATGCTACAATTGCCGGGCAATCAATGCGGCACTGT # Right flank : AACATTTGCTACGGCATCGAGATTTAACGACTTCATTATTAGATAACCCAAGTCCTTGTTATTTGAATCGTTCTATAATGTCGAAGGTAATATGCCTTGTATAATAAGAATTATCCCTGAAAATTTCCTGTCCGGCGTATTCCCCCACGAAGCCGCCGGCGCAATATACATCGACACAGAAAACAAACTCCCCCACGGCCTTGCCTGGATAAGATTGGAATAACCCATGATAAACAACGAACCCGTCCACTTCTCCCTGAAATACCTTGCGCTCCTGATACGCCTGCGCTGCTGTGAGCCGGCCCGGCTTCCCGGTTATCTGGGCTCCACCCTCCATGGAATTCTGGGATGGGCCCTGCTCAATCACAAGGAAGCATACAGATACATATACGAGAACAGGAAAATGGCTGAAGGCGGTTATGATATCCCCAATCCTTACATTATCAATCCGCCCGGGTACAGGGAGCAGTATAATAAAGGCGATGAACTCAGATTTCAGG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTTGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11862-11104 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11861 32 90.6 34 NNN............................. AGCGACAGCCAAGTATTTTGGCTGCTCTGATAAA 11795 32 100.0 35 ................................ ACCGCGCTTGCAGATAATGTTGTCTTATTACCATC 11728 32 100.0 33 ................................ AAATACCCCTGCGATTTCCGGATGTATTACTTG 11663 32 100.0 35 ................................ ATTGATGGAAGAAAAAGTTTTCACCGCAGCGCTGC 11596 32 100.0 34 ................................ ATGATTGCTTAGTTTTTATCGTTAGGCGGTTCAA 11530 32 100.0 34 ................................ GACATAAATGAAATCTGCGACATACTCGGAACAA 11464 32 100.0 34 ................................ ACAGCATCTATATTGCCATCCAAGAAATATCTAT 11398 32 100.0 33 ................................ GTATCCGATTGCCTCTATATCTGCTGTTGTCAG 11333 32 100.0 33 ................................ ATGGATTCTTGGAGTTAAGGAAAGCTGACTTTG 11268 32 100.0 34 ................................ ATGATTGCTTAGTTTTTATCGTTAGGCGGTTCAA 11202 32 100.0 35 ................................ ACCGCGCTTGCAGATAATGTTGTCTTATTACCATC 11135 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.2 34 GTCGAGGCTTATGTTGCCTCGTGGATTGAAAT # Left flank : TATCTATAAAGGGAAATAATGTGGGTGAAAAAGATAGTGGTTGGGAAAGTATCTGATCTATGTAGTATCATTTTAGATCAGTGTTAAAAGATACTTCATTTGTACAGAAGATTTTTAATGTTTTTGCTGGTGCGAATCACAAGTTCACATAAAAATCCCGTGTGATTCGCACCAGATTTATTATAGAGATAATTGAAATCTTTCAGTAAAATAGAAGAATAAAAATTTTTTATTGAATGTAAAATTATTAAATTGTATAATAAATACAAATTAGTGTTAAAAGTAAGAGATTTGTTGTTTGATTTTGCTGTCGAGGCTTATGTTGCCTCGTGGATTGAAATGGTCCAGCAGATTTTGGTATTTGCACGAATAGTACCGTCGAGGCTTATGTTGCCTCGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCATTCAATGTAATATCTATGCAGGCTATATCAGTCGAGGCTTATGTTGCCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATGTTGCCTCGTGGATTGAAATGCTACAATTGCCGGGCAATCAATGCGGCACTGTGTCGAGGCTTATGTTGCCTCGTGGATTGAAATGTATCCGATTGCCTCTATATCTGCTGTTGTCAGGTCGAGGCTTATGTTGCCTCGTGGATTGAAATGCAGATGATGAACATTATCAACTTGGTGACTGGGTCGAGGCTTATGTTGCCTCGTGGATTGAAATACAGCATCTATATTGCCATCCAAGAAATATCTATGTCGAGGCTTATGTTGCCTCGTGGATTGAAATTCGTTACCGCTGATTTGAAAGGAGAGAAAAAGATGTCGAGGCTTATGTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTTGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 22298-21808 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 22297 32 100.0 33 ................................ GCATAACAGGCGGTACAATAACCAGTCTAAATG 22232 32 100.0 32 ................................ GCTTTGCGGGATGGCGTTCCCTTCCTTGTTTC 22168 32 100.0 34 ................................ ATGGATATGACAGCTCCGAATACTTCACCCACTT 22102 32 100.0 33 ................................ GTAATGAAACCTTTAAATGGTATTCAATCCGAA 22037 32 100.0 34 ................................ AACAACACGCAAGGAATATTGTGCTGATTATGCA 21971 32 100.0 34 ................................ TGTAAAGGAAACATTTGTCAAGGCATTTGAATAT 21905 32 96.9 34 .......T........................ CTTGCCATGCTGGGAGACCAGCCACGGGGGCAGG 21839 32 84.4 0 .................T.TACA......... | ========== ====== ====== ====== ================================ ================================== ================== 8 32 97.7 34 GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATACAGCCTCGTGGATTGAAATATAGACTTCGAACGGGATATCCCAGGTAACGCAGGTCGAGGCTTATACAGCCTCGTGGATTGAAATACAGAAGGCGAAACGCCGGCAGGTAATTAAGGAGGTCGAGGCTTATACAGCCTCGTGGATTGAAATATTGTAGGGGCTGGTCTTTTCCCGGTCATCAGCGTCGAGGCTTATACAGCCTCGTGGATTGAAATACCGCAGACGGGAAACCAGGATATAAAAAGGCAGTCGAGGCTTATACAGCCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATACAGCCTCGTGGATTGAAATGGGTTACTAGTGATGGACATAGCGTAAAAGTTTG # Right flank : TCTATACAGAAGTTTTTAATATTCCATCATACATGTTAATTTTTATACATCTTGTTAAACCACAGCTACATACTTTCTATTTGCATAAAAATAGAGATGAAATACATTACAAAAACTATCTTTTTTATACGTCATTACACACAAATATAAAAACAACTAATAATTACGATGTATTGGAGAATACGAATGAAAGAAAATATATTGCTTTTATGCATGAGTCCTGTGGCTAAAGTGAAGTCAGAATTTAATTATTCTTACATATATAAAGATAAAGAATATTTCCTTCAGGGAATTATGACAAATGAAGCGCCAGCCAAAAGTGTAATAGAACGGTTAGAATTGGATAATGGCAAAATGTTGGATAAAATTGTTATGATTTGCTCAGATTTAACAAGAAAAAAGAAATTAAAAGAAATATTTGATGGACATACTGAGGATATGCAGCTTTATAAGATAAGAACAGCATTATCCGAAGAAGAAATAACAGATATGACCACATT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 22683-22520 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 22682 32 100.0 34 ................................ ACAGAAGGCGAAACGCCGGCAGGTAATTAAGGAG 22616 32 100.0 33 ................................ ATTGTAGGGGCTGGTCTTTTCCCGGTCATCAGC 22551 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Left flank : ATTTACGTGCAATATATATCAATAAAAAAAAGATGAAATGAGATTGATTAATTCAAATTGTCATGTTGAAATTAGTGCGAATCGTAAGCTTACATTAATTTGCCGGGGGATTCGCACCGAATTTTTGTAAGTAGTAATGAAATTTTAAAATATATTGTAATTGTATAGTGATAAAATTTAATAGATGTTGTATAATTGTTGTGTTAGGAAAAAGTTTTGAATAGATTTTTTGTATGTTTTTGCTGTCGAGGCTTATACAGCCTCGTGGATTGAAATGGAGCAGTGGCGATGTACCATGGTACACGGCCTGGTCGAGGCTTATACAGCCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATACAGCCTCGTGGATTGAAATATAGACTTCGAACGGGATATCCCAGGTAACGCAG # Right flank : ACCGCAGACGGGAAACCAGGATATAAAAAGGCAGTCGAGGCTTATACAGCCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTATACAGCCTCGTGGATTGAAATGGGTTACTAGTGATGGACATAGCGTAAAAGTTTGGTCGAGGCTTATACAGCCTCGTGGATTGAAATGCATAACAGGCGGTACAATAACCAGTCTAAATGGTCGAGGCTTATACAGCCTCGTGGATTGAAATGCTTTGCGGGATGGCGTTCCCTTCCTTGTTTCGTCGAGGCTTATACAGCCTCGTGGATTGAAATATGGATATGACAGCTCCGAATACTTCACCCACTTGTCGAGGCTTATACAGCCTCGTGGATTGAAATGTAATGAAACCTTTAAATGGTATTCAATCCGAAGTCGAGGCTTATACAGCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 25961-25797 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 25960 32 84.4 34 NNNNN........................... ATATACATCAAGCGCATGCATTGCATATTCAGTT 25894 32 100.0 34 ................................ TTTTCTCGGCGTGGAATTGTGACACAGGATTATA 25828 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 94.8 34 GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Left flank : CTCGTGGATTGAAATATTGCAAATAAAAGTAATGCTTTCCCCAATTTGTGTCGAGGTCTTTGCGACCTCGTGGATTGAAATGATAAATCACCAGTAAGATGTGCAAGTTCTGGACGTCGAGGTCTTTGCGACCTCGTGGATTGAAATATAGCTTAGGTATCTGGATGATTTCAGATAGAGGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTTATATGGCGTTATACGCTTTAAATGAATGCATGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTCTTAGCTCTTTTCTTTTCATTGCGTTTTACCTTGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTCCGGCTTCGCCTTTGTTGTAGGCTCCAGTATAACGTCGAGGTCTTTGCGACCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGCAATCAATCGTGATTGCAATAATTGGTGGGCTTGTCGAGGTCTTTGCGACCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTCTTTGCGACCTCGTGGATTGAAATCCTCCATCCGACTCTTCGTCTCTCATAAATTCAGTCGAGGTTTGCGTGACCTCGTTGATTGTAAGTTTGGAGAAAGATGGTCAGTGTTCATTCCATATCAAGAATTGAATTCCCAATTCAGGTAAGAATAATTTCATCAGGAAAATCGTAGCCGGCAAATAAGAAGCCTTTAACACCTCTTACATGAAATCAGATAACAATAATAATCAAAAGAACTGGAGAAATCATTATGTGGACATGCCCCAAATGTGGACGAACATTTAAAAACCAGAATCAGGATCATTTTTGTGGAAAGGCACCGGAAACAAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : NA // Array 6 26412-26118 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 26411 32 100.0 34 ................................ GATAAATCACCAGTAAGATGTGCAAGTTCTGGAC 26345 32 100.0 33 ................................ ATAGCTTAGGTATCTGGATGATTTCAGATAGAG 26280 32 100.0 33 ................................ TTATATGGCGTTATACGCTTTAAATGAATGCAT 26215 32 100.0 34 ................................ TCTTAGCTCTTTTCTTTTCATTGCGTTTTACCTT 26149 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Left flank : GGATTGAAATGTTCAGGCGGTACCATATGTCCGGCTGAATATCGTCGAGGTCTTTGCGACCTCGTGGATTGAAATGTGGAAAATGCAGTATAATTGGCTTCCGGAACGGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTTCGTCAAACCGTCGCTTATGCAAATGCACAGCAGCGTCGAGGTCTTTGCGACCTCGTGGATTGAAATGCCTGAAATTGTTCCTGAAACTGTTCCTGAAATTGGTCGAGGTCTTTGCGACCTCGTGGATTGAAATATCAATAATCCCTTCAATCTCACCCATGGGAAGCGGTCGAGGTCTTTGCGACCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCTTTGCGACCTCGTGGATTGAAATATTGCAAATAAAAGTAATGCTTTCCCCAATTTGT # Right flank : TCCGGCTTCGCCTTTGTTGTAGGCTCCAGTATAACGTCGAGGTCTTTGCGACCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCTTTGCGACCTCGTGGATTGAAATATATACATCAAGCGCATGCATTGCATATTCAGTTGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTTTTCTCGGCGTGGAATTGTGACACAGGATTATAGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTGCAATCAATCGTGATTGCAATAATTGGTGGGCTTGTCGAGGTCTTTGCGACCTCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTCTTTGCGACCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : NA // Array 7 26934-26637 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992779.1 Clostridium sp. KLE 1755 Scaffold955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26933 32 100.0 33 ................................ GTTCAGGCGGTACCATATGTCCGGCTGAATATC 26868 32 100.0 32 ................................ GTGGAAAATGCAGTATAATTGGCTTCCGGAAC 26804 32 100.0 36 ................................ TTCGTCAAACCGTCGCTTATGCAAATGCACAGCAGC G [26802] 26735 32 100.0 35 ................................ GCCTGAAATTGTTCCTGAAACTGTTCCTGAAATTG 26668 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 34 GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Left flank : GATGCGGGCAGGAAGGGCGTTGCGGCGGAATAGAAGAGGGAAGAGTAATTTAAGCTCAGGCTGGGGAGGACAGACAAGGGAAGGATTTAGAGATGAAGAAAAGGGGACTTTTTTAGGACGGGAGTATGATTTTAGTTGGTGCGAACCGTAAGTTCCCATGGATTTGCCGGGGGATTCGCACCTGTTTTTGGGGAGAAATGGATGAAATATAGTGTGGAGATGATTATTTGGTGGAAATAATCGTGGGGTGGTTGTATAATAAATATAGATTTTGCAGGGGAAGGAATTTGGTTTTTGGAAGGATTTGCTGTCGAGGTCTTTGCGACCTCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTCTTTGCGACCTCGTGGATTGAAATGGCAAATAACAGTCAGTTTGACATCGTGTCATT # Right flank : ATCAATAATCCCTTCAATCTCACCCATGGGAAGCGGTCGAGGTCTTTGCGACCTCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCTTTGCGACCTCGTGGATTGAAATATTGCAAATAAAAGTAATGCTTTCCCCAATTTGTGTCGAGGTCTTTGCGACCTCGTGGATTGAAATGATAAATCACCAGTAAGATGTGCAAGTTCTGGACGTCGAGGTCTTTGCGACCTCGTGGATTGAAATATAGCTTAGGTATCTGGATGATTTCAGATAGAGGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTTATATGGCGTTATACGCTTTAAATGAATGCATGTCGAGGTCTTTGCGACCTCGTGGATTGAAATTCTTAGCTCTTTTCTTTTCATTGCGTTTTACCTTGTCGAGGTCTTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTTGCGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : NA //