Array 1 2841-2385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTD01000018.1 Cronobacter malonaticus ENBT0334 CFSAN001453_contig0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2840 29 100.0 32 ............................. TGTGTCAAAAATTTCTGAATCAATACCCGATA 2779 29 100.0 32 ............................. CTGCCCTGGCTCTGTATCTTCTTCGTAGTCAC 2718 29 100.0 32 ............................. GCATTTATAACCTCGCTGTATACCAGGATGTC 2657 29 100.0 32 ............................. TTGTCATCTGGAAAATAGACGACAACTATAAC 2596 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 2535 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 2474 29 96.6 32 ............T................ CGGATTGCATCAGATAACCGACTCCATGAATC 2413 29 93.1 0 ...........TT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCAAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24379-24652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTD01000053.1 Cronobacter malonaticus ENBT0334 CFSAN001453_contig0052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24379 29 96.6 33 .........G................... TAAATAACCGTCAAATCGCGTTTCACAGATTCG 24441 29 100.0 32 ............................. GATCATTACCCACGAACAGGCGCTGGCGCAAA 24502 29 100.0 32 ............................. CACCGGCCCAAATCTGGTTTGCGCCACCCTCT 24563 29 100.0 32 ............................. TTCCGGCAGATGAAATCCTGGGGATCGTCAAA 24624 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGTTCCCCACGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGAGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTGTTATGGATGGCGGCCAGGGCTTCACGCAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50655-51280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTD01000007.1 Cronobacter malonaticus ENBT0334 CFSAN001453_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50655 28 100.0 32 ............................ AGCCAGGCGACTGCCGGTAGCCTCTTCCAGCC 50715 28 100.0 32 ............................ ATTGTGGTGGGCATTCTGGCCGCCGCTGCTGC 50775 28 100.0 32 ............................ TTCACACCGGCGGCGCTCCGGCGCTGTTCGCG 50835 28 100.0 32 ............................ AGCATCCAAGCGATCACATAATCGGCCTTGAA 50895 28 100.0 32 ............................ AGACCGGCGCGCAGATGGCGGGCAAGGGTGCA 50955 28 100.0 32 ............................ GTTGAACACACTGGAGCTGGCCGGGCTGGATA 51015 28 100.0 32 ............................ ATTGAGCACGTCACCCTTAACGATGGTGCCGT 51075 28 100.0 32 ............................ TGTTCAGTGCCGGGCACAGATACGTTGCAGCA 51135 28 100.0 32 ............................ GATATTAATTTAATTGGGTGGAAAATCGCTGC 51195 28 100.0 32 ............................ ACGTAAACGCACCACTCAGGCAGGTGCTGGAA 51255 26 89.3 0 ....................--..A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGCATTGCGCCTGGACGTCTAACCCCTTTTTTATGCTCCGCCTCTAAATGGTTGATTTTTAATACGCGTACTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATACTAAAGCCTGAGGGAGGGCTTTTATTACCGTTATATAAGTAGCAACAAAATAAAAAGGAAAGAATTATCCATATAACTTATGGTTTCTGTCGTATGGGCTAGTTCGATAATTTCATGGCGTACATCAGTCAGGTGCTAATTGCCCGGTATATCGGCTATCACATAAAAGTATTAAATCAAGCGCCAATATTCGCAGGCTTGTTACTGGTACAACATCCTGCCAGGCTAATCAGTAATGATGTTTGTTTGCGGACGGGCGTGAAAATGGTCTGTAAAGTGGCATTTCGTGTCACAGGAAAATAAAGCACGCGAAATGAAAGGGATATCACGGCATATTAAGCGGGTTAATTATAGGCTGGTGTTTTATTTATATTTCAATGGAATATAAATACAGAAATCATCTAACGGAATTATGTAATGGACCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATTTGCAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59933-60444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTD01000007.1 Cronobacter malonaticus ENBT0334 CFSAN001453_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 59933 28 100.0 32 ............................ ACACGTACAACCCGTAATAGGGCGGATAAAAC 59993 28 100.0 35 ............................ TCCCCGCGCGAGCGGGGATAAACCGTGAGTTTGTT 60056 28 100.0 32 ............................ ACGAACGGTTTATACACGCGGCCTCGCGCTCA 60116 28 100.0 32 ............................ TTGTGCAACGCGACATCATGGCGGTATTTAAT 60176 28 100.0 32 ............................ AGCGGCATCCCTGCTGACTCTATCCCGAAAAA 60236 28 100.0 32 ............................ CTGCCGTAGCGGGGTTTTTATTGTCTGTTATT 60296 28 96.4 32 ...........................G CAGGAGTCCATTTATTACCTCTATAGTGTGCG 60356 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 60416 27 92.9 0 ........................-..T | T,G [60436,60439] ========== ====== ====== ====== ============================ =================================== ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCGGGCCTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTCGCACGCGTACAGGTGAAAAGTAACCCCGAACGCCTGATGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGATTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGCCTCGCTAACCTGTTGATTTTTATAGTGGGTTAGTGAGACGTTGAAAAAGGGTTTTTAAGAGGTAAGCAGTGGTTATAGTTTTATAAACAATGGGTTAGGTGATTTTGGCTTCT # Right flank : TCACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAATTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGTTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGCTCAGGCCGGCAAAACCGCGTTCGCCGGTAAAAATGTCACGACCTGGGGGTATAACGGTTCGCTGCTGGGCCCGGCGCTTAAGCTGCGTCAGGGCAAACCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCATGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //