Array 1 1608420-1607936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041611.1 Streptomyces sp. S1A1-3 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================= ================== 1608419 28 78.6 33 C..AC......CTG.............. GGAGGGACGCGATGAGCGGGCCTGCCACGCGCC 1608358 28 96.4 33 .......................A.... GTCTTCTGCTACACCGTCGGTTTCGTCCTCCTC 1608297 28 100.0 34 ............................ AGGCGGCAGCAAAGCCGCGCGAGTTGAAGCTTCG 1608235 28 96.4 33 ........T................... GCCGGACCTGATCCTTCACGTCCTGCGCGATGC 1608174 28 100.0 33 ............................ GCCGCTTCCCAGCATTCGACTCAGCCCGATTCC 1608113 28 100.0 33 ............................ GGCCATCACGTCGATGTCGGCGACGGCGGCGTT 1608052 28 96.4 61 .................T.......... GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 1607963 27 71.4 0 .C....A....A..C..TT...-....G | C [1607946] ========== ====== ====== ====== ============================ ============================================================= ================== 8 28 92.4 37 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : GGAGTCCGGGGATCTCCTCGCCCGGGCCGTAGAAGTGCCGGAACCGCTGCCAGGGGACCTCGTCGTACCTGAACCCGTCCTTGACCTCCCGCGAGATCGCGCCCACGGCCGTCCGTACGTCGCAGTCCGTGCCGACCCACCGTTCCGGCCAGCCAGCCCAACGGTCATCGTCCATGGCTTGGCCTTCCAGTTCACCGACAGCATCCGAACCCCGGGAGTTTAACGACCGGTGATCAAGAGGCGGACCGCTTCTGCCGCACTCCGGTGGCACCGCACCACAGCGACGTCATTTCTCGTTCTCGTGAGCATCTGCAGCACTCAAGATCGCCATCTGCTGTCCAAACGCTGCTACTTCACGTGAACGAAGCCACCGGCCGGCTCACCCCCGCCTGCGCAGGGAGGACCGAAGAACGAAACGGCAAGAATTCCGGGACGACGGCTCACCCCCGCCTGCGCGGGGAGGACAGGGTCTTGGGAGGATCACTCTTTGTACCCGGCGG # Right flank : CAATGAAGGCCATCTGGGCACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCATCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11422341-11421952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041611.1 Streptomyces sp. S1A1-3 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 11422340 29 82.8 32 ..T.A......TGG............... CTGTCGATCGAGGCCCAGGCCCAGGGCACGTC C [11422334] 11422278 29 96.6 32 .......A..................... GGCTTCAACTTTCCCTGCTGGAGGATCTCGGG 11422217 29 100.0 32 ............................. AACACCCGGGGCCGTGACCCCGTAGACAGGTG 11422156 29 93.1 33 .............G.........A..... GCAAGGAGTCGGTCACCGTCACCCTGTCGCAAT 11422094 27 82.8 87 ..T........A......-..C...-... TCCTTGATATCGAGCGTGAGTTCCCCGTCTGTGTTCTCCTTCCTCAGCGGCGGAGGTGCCATTGGCGAGCATCTGCCCGTCGACGTC 11421980 29 79.3 0 ...........CG........T....AGT | ========== ====== ====== ====== ============================= ======================================================================================= ================== 6 29 89.1 43 GTGCTCTCCGCGCCAGCGGAGGTGGGTCG # Left flank : TCGACGCCGAGGGCATCGATATGGGCCCGTCCCCGGTGGACGCCGCGCTCGCCGCCGACCTGGTCCTGCCGATCGAGGAGCTCGAGCTCACCGTTCGTTCGTACAACTGCCTCAAGCGTGAGGGCGTCCACTCCGTGGGTGAGCTCGTCGCCCGCTCCGAGGCCGACCTCCTGGACATCCGCAACTTCGGTGCGAAGTCCATCGACGAGGTCAAGGCGAAGCTGGCCGGCATGGGCCTGGGCCTCAAGGACAGCCCGCCCGGATTCGACCCGACCGCCGCCGCACTCGGTGCGGACGACGGCGCGGACGCGGGTTTCGTGGAGACCGAGCAATACTGAACGCTGCGCTGCGCCGGTCGTAGAGACGCTTCGCGCACCGGCTCACCTCCGCTCGCGCGGAGAGCACGCGTACCTGGACCGCGTCTTCTGGGACCCGGTCGGTTCGCCTCCGCTCACGCGGAGAGCACCGCTGGTTCTTCACCGGCGCCCGCTCGGTCGGCG # Right flank : CCGCTGCTCTGCTCAACGACGAGATTCGTCTCCCTCGCCGCACGCACCGAGCCGTGCCATCAAGCGACCGGGTGCGTCGGCAAGCATGTTGTTGAGCTGCTGGACGCCCGGGAGCTGGTCTGGATCTCGTGTCCGCGGCCAAGATCCGGGCCATTCCCGGAGCAAGTCGCCAACCGCTGCCGACAACGCTCCCGTCTCCGCAGGTCAGAGCAGGCGCCTCGCGTGTATCACCATGAGACGCGGTGGCCTCCGGGATGCACGGGGCAGGCACAGGGCGCAGAGACATCACCGCCCTCCTTGTCTCCCAGCGAGACGGAACCCAACCGGCACCAGACTGCCCGACCAAACAAGATCACCAAAGGCAGTCGCCGAATCCGCCAAGACCGCGTCGGAGTGGACCACGGCGGCACCATCCATGTGGACAAATACGATCAGGCCCTGAAAGCCGCGCATCAGGCCGGCTTCCCCCTGTTCTGCAAACCGGCCTCACTGCCTGGACC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.97, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCCAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //