Array 1 496787-496954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACJI010000005.1 Streptococcus pyogenes strain GCH124 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 496787 36 83.3 30 T..AACTT............................ TAAAGTTAGCGTCTAAACCAACGATACTGC 496853 36 100.0 30 .................................... AATCAAACTTGTTATTTTGTAGCCTGATGG 496919 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 90.7 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : TTGCAGATGTGAAGTGGCTTTTTCACCTAACTCAAGTCGTTTTTCTTGGCCTCCTTTACCCAACCCTTAAGACTTTCACACAAAGGTTAAAAACCAAACGTTTCTGGCTCCTTCAAAAACCTTTAATACTAGCAGCTTTGTTTCCTCTTATGATTGGTCTAATGGCTAGTTTCATTGGGTTTGAACATTTTTTTACTCTTTTTCATAAGGTGCTTTTTGTAGGAGATAGCAGCTGGCTCTTTGATCCCTTGAAAGATTCTGTGATTTGGATCCTTCCAGAAGTCTTTTTCTTGCACTGTTTCCTTTTCTTTATGATAGTTTACGAAATCATCCTGTGGAGCTTAGTAGGTTTAGCAAGATGGCAGCGCCTAAATGTAGAATGATAAAACAAGCGTTTTGAAAGCGCTTGTTTTTTAGTTTGCAGTCAGAGTAGAATAGAAGTATCAAAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTAT # Right flank : CAACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCTAGGGGGGAGTTGGAGAGGTTTTGCGGTAGATTGAACGCCTAAGACTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATATTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTAAGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGACGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 248419-248255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACJI010000007.1 Streptococcus pyogenes strain GCH124 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 248418 31 100.0 36 ............................... TAAGTAGGTGGCCCCGCTCGCTTTAATACTCGTGAC 248351 31 100.0 35 ............................... TATTTAGTCGCCAACTTTAACTATGATCAAACTTG 248285 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 GTCTCACCCTTCATGGGTGAGTGGATTGAAA # Left flank : ACACTATTCGGACAGAAATCGCTGAGCGTGTTAAAGAAAGAGGTAAACGAGATTCCAATGGGATTTATCGCTTAGATTTACCGACAGGAGCTGGCAAGACTAATCTTAGTATGCGTTATGCGTTTCACCAATTAGTTCATCACGACAAATCAAGGTTTTTTTACATAACGCCCTTTCTTTCGGTTCTTGAACAAAATGCTTCCGAAATTAGAAAAGTTACAGGTGACCTTGGCGTCCTAGAACACCATTCCAATGTGGTGAAACAGGCTAATGAAGATGATGATGACAAGGAAAGTTTATTGTCAGCTTATCTTAGTGATAGCTGGGACAGTCAAGTAGTCTTGACTTCTATGGTTCAATTTTTCCAAACACTTTTCAAAACAAAATCAGCTAATCTGAGACGTTTTTCAAGTTTGATTAATAGTGTTGTGATTCTAGATGAAGTTCAATCCCTGCCTATTGAAATGGTCCGTTCGAACTTGTTGATATTACTCACGACC # Right flank : GATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //