Array 1 7913-7213 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PQNF01000040.1 Corynebacterium bovis strain WCM4 40, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      7912	    29	 100.0	    32	.............................	GGCTGGCACGGGTAACCACCGGTGAGAATGTC	
      7851	    29	 100.0	    32	.............................	GCATGGTCACCCCCCGTGAGCTCCGAGCCGCC	
      7790	    29	 100.0	    32	.............................	ACAGCCCCGCTCGAGTCATGGCGGACGTACGC	
      7729	    29	  96.6	    32	............................G	CGGCTGTGCATGACGTCAATCGCTGCGTTCAT	
      7668	    29	 100.0	    32	.............................	ATCTGGGACGTCGCCGCCCGCAGATCATTCGT	
      7607	    29	  93.1	    32	.............CG..............	ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG	
      7546	    29	  93.1	    32	............C...............T	GCTTCGTTGAGTGTCGGTCCGGCAGGTGCCTG	
      7485	    29	 100.0	    32	.............................	GTGGGCGTCCGGTCGGCACTGTCGACGACGGG	
      7424	    29	  96.6	    32	............................G	CAATGGCAGCGGGTAGTGAAGTCGGGGGTTGA	
      7363	    29	  96.6	    32	......................G......	GCGTCCGAGTGGGCGCGCCTCGACTCGGATTT	
      7302	    29	  93.1	    32	............C...............G	CGTCACGCTTGGACGACTTTGATCCGGCATGT	
      7241	    28	  93.1	     0	...........-................T	|                               	C [7227]
==========	======	======	======	=============================	================================	==================
        12	    29	  96.9	    32	GTGCTCCCCGCGTGAGCGGGGATGATCCC	                                	       

# Left flank :   GCACCGGAAGACGGGGTTGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGGCTCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAGCGGGTGCGTGGTCACCTCACGCGATGGCTCTCGGAAGTGGCGACCGGAGTGTATGTCGGCAAGGTGAGTGCCAGAGTGCGGGACGAGCTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACGTACCCGACCACCATCTGCGAGCAGGGGTACGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGCCTGGTCCTGTTTCGTCGGCCGGGCCGTGACCGGACGTCGCGGACCCGCGGCGATTGGTCACGGGCCTCGCGGGAGCGCGACGGCAGGACCAGACGAGCGGATGATCTGCAGTGATGGTTGGTGCTGACGTGAGGGCGCTGATCGACATTGAATGAAATCTGGCTTCTCGTGTACTAACATCCCTGGTCAGGAAGT
# Right flank :  CACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCGCCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGCCTGTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGCCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGATTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGACGCCGCCG

# Questionable array : NO	 Score: 5.80
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCCCCGCGTGAGCGGGGATGATCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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