Array 1 5498-3655 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDJ01000209.1 Salmonella enterica strain STy2 Contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5497 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 5436 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 5375 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 5314 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 5253 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 5192 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 5131 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 5069 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 5008 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 4947 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4886 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4825 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4764 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4703 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4642 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4581 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4520 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4459 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4398 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4336 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4233 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4172 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4111 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4050 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3989 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3928 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3867 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3806 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3745 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3684 29 96.6 0 A............................ | A [3657] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16123-15180 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDJ01000036.1 Salmonella enterica strain STy2 Contig_332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16122 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16061 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16000 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15939 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 15878 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15817 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15756 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15695 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15634 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15573 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15512 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15451 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15390 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15329 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15268 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15207 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //