Array 1 1567-928 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000108.1 Actinomyces oris strain A19A-1 A19A-1_contig114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1566 29 100.0 32 ............................. GCGAGGCGGCGACGGTGGTCGGTGGTGGTCAT 1505 29 96.6 32 ............................T CTACACTCAATAACGATGTTCATATTGCCTGG 1444 29 96.6 32 ............................T ACCGTATCGTGCCCGCGTTCTTTTCGGAGTGA 1383 29 100.0 32 ............................. GCCCTCGGGGTTATTGATGCTACGGTTCTCAA 1322 29 96.6 32 ............................C CGGACGCGGCCTCCAACTCGACGAAATCAGCA 1261 29 100.0 32 ............................. CAGTCCGACCTGCCGAAGCCACCTCAGCCGCC 1200 29 100.0 32 ............................. GCGAGGCGGCGACGGTGGTCGGTGGTGGTCAT 1139 29 100.0 32 ............................. GGACGTTCAAGATTGCTAGTAATTCTACCGGC 1078 29 96.6 32 ............................A GCGCGTCAATTTTCGCCAGGCCCGCCTGCCCC 1017 29 96.6 32 ............................C GTGGATCCGGTGTTGGCGCCGGACAAGGTGAA 956 29 89.7 0 .....T..............A.......C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GAGAAACACCACGCACTCCAAGAAGCCCTCGATCGACGGCTACGACC # Right flank : ATGAGGCTTATTCATGGGGTGTAGGTGAATGTGAGTCCGAGGATGGCTGTGATGGTTTCTGGGAAGGTTTCTAGTGGTCTTCTGTAGCCGGTGTGCAGGACTCTCCAGGTCTTGGAGGCTTATTCACAGGGCTAGCCGACTCCGGCATCTGCGCAGTTCAGAGCACCTTTGACGGATGCTGTGAATAAGCCTCTTGATGTTGGCGATGACTCGCTCGATCTTGTAGCGGATCTGGTTGACGGTTTTGTTGTAGGTCTTGTCGTCTGGGTGGAGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGGGTTTTCTCTTGGGGGTGATCATGCCCAGTCCGATGTACCCCTTGTCGCCAATGTGCTTGGGTGGTGAGACTCCGTCTGGGAGGTCGGTGGCGGGGACGTCGAGCAGGCCGCAGCGGCGCAGGGCCTTGGCGTCGTGCGTGCGTCCGTTTTGGGGGTCG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11770-12164 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000001.1 Actinomyces oris strain A19A-1 A19A-1_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11770 28 96.4 33 ................T........... GCGCACGCTCCAGGTAGGAGACTTTGTGCTGAG 11831 28 100.0 33 ............................ GGGGCACCAGGGCCATGGTGTCGTCCGGACCTT 11892 28 85.7 33 .......T..T.CC.............. CTCCGCCAGGACCGCCTCCATCAGCAGCCGCGA 11953 28 92.9 34 ............C.C............. CCAGGTTCAGACCGACAGGTCGCATTTTCCGCCG 12015 28 100.0 33 ............................ CCCTCTGGATGCCGGCAACGTGGACGAGGCAGT 12076 28 92.9 33 ............C.C............. GGAGCCGTGCAGTTTCGCGTCGAGGTGCGCCTC 12137 28 92.9 0 .C........T................. | ========== ====== ====== ====== ============================ ================================== ================== 7 28 94.4 33 GTCAGCCCCGCGTATGCGGGGGTAGAGG # Left flank : AACAGGCTGGATGCTGCCACTCATCGGTGGGTTGGGCCGCCGTCACCTACCCGTCCTGCGGGGGGTGCTCGTGGCCGGGGGTTCTCGGCTTGCCTCCGTGGGACTTGCGGTGAGAACGGGGGTGGTTGAGGCCAGACTCGCCGAGACCAGGACGATGGCTTCTCTGCCTCGAGTTCTGCGGGCCGCTACCGCTCCATCGTCGCTGTGGACCACCGTTGTGCCGACGGCGGAAGAGCCTGAACGCATTGTGTCCTTGTTGGAGGAATGCGCCTCGGGGCTCGGCTGCGGACTCGTTAAGGTCGAGCGTCACTCAGAGTCGCGAAGCAACGGAGGTGTCGATGGGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGAGGTGCCCGGGCCGGTGGTCTTCGACGGCGCCCTCATGGTTCCCCTGGGAGCCACCACCTTGGCAGTGAACCCACGGCGACCCAGAACCGACTAACACCGCAGGTCAGCAG # Right flank : GCAGGCCGCACCCTTGCACTGACGTTGTGCGGAAGTCAGCCCCGCACCCGCGGGGGTTCACGCGGACTTGCGGCTGACGTTGTCTTGGGGCGGGACCTGGTGAGAGCGCCCGGCCCTGTCACTAAGGCCTCGCCAGACCTCGCGGAGTCGAGCACGTCAGCAGCTCAGTGTCCACGGTGCTGACATCAGCGGTCCCGCCGTCGGAACGCCCAGCGAAATCGTTGGAATTCCAAGGATCCGTCTCGGCTCGCGACGCCGGTGCCGGGTTGATGTCAGCGTCATGGACACCGACGCCCCGCCAGGGCGCTGTCAGCGACCCGCTCCTCAGAGAGCCGCGATCTTGAAGGTTCCGACCCGCCCCGCGATCCCCGCCGCCAGGTCCTCGATCATCCTGGCGTCGTGGAGACGGGCCAGCCAGCCCTCCGGGATGCCGCTGCGCCCGTACAGCGCCCCCGCCAGCTGCCCGTAGATGGCCCCGACGGTGTCGGCGTCGTCGCCCA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGTATGCGGGGGTAGAGG # Alternate repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 40513-39005 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000010.1 Actinomyces oris strain A19A-1 A19A-1_contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 40512 36 100.0 28 .................................... CTGAGGATCCAGTGGTCCTACCCGTGTT 40448 36 100.0 28 .................................... TGCGCGCTCAGGACCCGGCCGCAGCACG 40384 36 100.0 28 .................................... TCCCACGAGACGGGGTTGAAGGTGACCA 40320 36 100.0 28 .................................... CCCGGGGCGATGGACCGGCCATCGCCGT 40256 36 100.0 28 .................................... AAGCTCGGGGACAAGGTCTCCGTCACCG 40192 36 100.0 28 .................................... TGCTGTCTGACACCTCAACCCGTGTGGT 40128 36 100.0 28 .................................... CGGCGCCCGCAACATCGGTGCCCTCCCC 40064 36 100.0 28 .................................... TGCCCACGCGCGCCCTGTTCGACACCGG 40000 36 100.0 28 .................................... GTGGTCGCCACGTTCGTGGTGATCGCCT 39936 36 100.0 28 .................................... TGTCCATCGACGCCCCAGTGGTGGATGG 39872 36 97.2 28 ................G................... CCGGGGGCAAGCTCCACGCCTACGTCGG 39808 36 100.0 28 .................................... CGATGTGCAGCATGCCGGAGCCGTCAGA 39744 36 100.0 28 .................................... GGATGCTGCCCCTGCCGGTGATGTGTTT 39680 36 100.0 28 .................................... GCAACCTCAATGAGGCTGACGTTGTGGG 39616 36 97.2 28 ..................G................. CGCAAGGGCTTGTGGCCGCGGTCGGACT 39552 36 100.0 28 .................................... GTAGCGGTGACCGGCCCGCTGGGCGGGT 39488 36 100.0 28 .................................... ACTGGCTTGAGTCGGTTGCCTTCTGCCT 39424 36 100.0 28 .................................... ACGGCGATCGTCGCCCTGGTCGTCAACC 39360 36 100.0 28 .................................... TCAGGTGATGTGCCCGGCGTGCGTCTGG 39296 36 100.0 29 .................................... TACAGGCGGGTTCAGGCGATATAGCGCAC 39231 36 100.0 28 .................................... ACCTTCCTGACCTCCCGGATGGACGCCG 39167 36 100.0 28 .................................... CGACCAGTACGGTGAGGCTGTCCCCGGA 39103 36 100.0 28 .................................... CGGGTGTCCGACAAGGCGTCCAAGGCGG 39039 35 94.4 0 ............................A...-... | ========== ====== ====== ====== ==================================== ============================= ================== 24 36 99.5 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CGTTCCGCGACGACGGCGCTACGCTCCCAACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGCCAGTACTGTGAAGGGGACCGAGCCCGCGTGGATGTCCCGTCGTGGACCGGACCTAGGCGTGACTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCACCTTCTTCTGGATGAGGGTTTCTGGATGCTCCAATACAGCGTCTACGTCCGTTACTCCCCGACCGTCGCCGGCGAGCCTCGCAGGGTGGGCTCGATCAAGCATAACCTGCCACGCGGTGGCGAGGTGAGGATGCTGTACGTCACCGACCACGAGTGGTCGCGCACACTCTGTTTCCGCAACGAAGAACCCGTTGAGGCTGAGTCAGAGCCCCAACAACTCATGATCTTCTGACCTCTGATGAGGCGTTTGCGCTGGTCAGACCCCCTTGATAGACGTTTCT # Right flank : ACTGAGGTGACATGTGCGCAGCGCGGTGGGGACTCCGGCGTCGCCGGGCAGGGCCGGTACCGGACCAACGACTCCGCGGCGCTCCTGGACGGCGCCGGAGGGGACGGTGGGGCGGGTCAGGTCGTTCAGGTCGCGCATGGCTCCATCTTGGCCCAGCCGCCCCCGCCGCGGGAGCCGCCGCCCCCATCGAGGACTTACTTTCGCCACCAGGACTGCGTTCTCCCCCATATGACTGCGGGGAGATCCCAGTAGCCTGGAGGACAGCGCAGTCCTCGATCGGAGGGTAAGTCCCGGGCGCGAACCGCAGCCACCACCCCGGCCCACCCGAGCCGCCTCCGGGCCTACTTACTGCACACGTGAGGGGGCGAGGGGCGCCGTCCGTGTCGTCTCAGTCTCGCCCCCACCCGTGAGTCAAGCCGCTCGTGCAGCCTCAGCTCGTCGAGTCCTCGCTCTCCGAGGTGCCCGCCGCGCCATCCGGGCTCCCGACGGCGTCGCCACCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 11024-11649 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000078.1 Actinomyces oris strain A19A-1 A19A-1_contig081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11024 37 97.3 38 .....................G............... GTGCGGGGTCAGGTTAACGAGATGCATTGTGTTCCCCT 11099 37 100.0 36 ..................................... GCTCATGATGTTCCTCCTTGGGTTGAGGGTAGGTGC 11172 37 100.0 36 ..................................... TTGTCGTACTGCATGTTCGCAGTCCTTTCTATGACA 11245 37 100.0 38 ..................................... TGCTCCGCCTCGGCCATCCAGGTGACCATCTGAGCCAG 11320 37 97.3 38 .C................................... GCGAGATGGATGACGTCGATACGGTCCATGCTGGTCAT 11395 37 94.6 35 .C...................G............... TTGTTGCTGGCGGCGAACTTGCTGATGACGGTGGC 11467 37 94.6 35 .........T...........G............... TCGGCTATAAGCCAGGGACTTCGCTTTGGGTCCTC 11539 37 97.3 37 .....................G............... TCATGGTTGTGTCTCTTCTGTTTCATCTCTCTTCTTC 11613 37 78.4 0 .....................G....CTT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 95.5 37 GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Left flank : CGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGGCAGGCCGACGGCGGCACCGGCTGGTGGCGGGAGGCCGGCGCAAGGCCGTCTATCTCTTTCTTTCTGGCGACACTACCGGAGGGGAGGCGCCCTGTACGGGGAGTTCAAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGAACGAGAGCCGGCGGTGCGCCGGCCGAGCCACGGAAGCACAATGTGTCGGCAGTCACGGCTAGGAACGTCGATCTTTTGTTTGACGTCGTTGGAAGTTGGTGGCTAGAGGCGTCTGAGGGGGCGTCGGTGACGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCAGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGG # Right flank : GGACTTACAAGTCCATCCTCATCTCCTTAACGAACTGAGCGACCAGGCGACTCGACGGAGGAAGCGCCCTTGACGCCAAGTCCAGGGTCCGACCTCTCCGCCACCACACCAGGATGTACCCGCAGTCACAGGCAGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAAGGTGCCTGAGGTGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCACTGTTGGCCGGTCCCGCAGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGACGCAACGACGCCCCTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGCGCATTAAGACGATAATGGCCTGTTGTGTAGTCTGGCGTACTCAAAGCCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACTCACCCCAGTCCCCGTCGGGAGAGTTGGTGACGTCAGAAAGCACCCAGCACCAGAAGG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 25277-26188 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000078.1 Actinomyces oris strain A19A-1 A19A-1_contig081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 25277 37 100.0 36 ..................................... CTTCGCCTGAGCCAGCCAAGTAAACTCATGAGCTCT 25350 37 100.0 36 ..................................... GGATGACGTACCGCGCGGCATATAATGCACGCTCTT 25423 37 100.0 36 ..................................... TCTTGTAGAGAAACCACAGCCTGAGCGTGGCTTCTA 25496 37 100.0 38 ..................................... TCTCCTCAGTGAAGACTTGGGTACTGAAGTCTGGGAAG 25571 37 100.0 35 ..................................... TCTGGGCCGCTTCGGACATGGAAAGCTCCTTCGTG 25643 37 100.0 38 ..................................... ACGAGAGCCACTTCGTACTCGATACGACATCCCCTTGC 25718 37 94.6 35 ..........C...............C.......... AAGGGCGGTTTGGTGCTCTTTGCCCGTCCAGGACA 25790 37 97.3 34 .............................G....... GGCTTCCGAGCGGTCTTCAAAAAGGCTCATGAGA 25861 37 97.3 32 .......G............................. TTGCGTTCATGGTGGTTGCTCCATGGTCGGCG 25930 37 91.9 37 .C...........TC...................... ACCACTCGCGCCTCTCCCAGCACGGCGGAATCACTCC 26004 37 100.0 35 ..................................... CGGAGTCATCAAACTTCCTGCTGGCAATAAATACC 26076 37 97.3 38 ..................................A.. GACAGGCATACGACCTTATTCTGCCGTGGCTTGCGCCT 26151 37 75.7 0 ..............C..GT......ACCT......GA | G [26183] ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 96.5 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : TCGCCTTGGCGGTCCTGACCTTCATAGGGCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGCGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGATCCTCATCGGCGGTGGGATCTGGCTGCTCGTCGACAAGGTGGGCGGCCGGGTGGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGACCCGGTTCCACCTCCACCACAGCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCATCGGAAACTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGTACTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : AACGTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCGGATGGCTCGGCGTGGGAAACGCTCCTGACGCCAAGTCCAGGGACCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAATGCACCTGAGGGGGCGTCGGTGGCGCTTGGCATCAGGACGCCGAAAAGTGGTTAAATAGGGGCGCTGCCGTCCGGCCTCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGAAGCCGTTCCCAGAGGCCGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCACGAACGCTGGAGGGCATCGCCACCTGAGCCCACAGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCAGCATCCTGACTCTCAGTCATGGTCTTAACAGTAAGTCAGAAAGCACCCAGCACCAG # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 26519-27361 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKQ01000078.1 Actinomyces oris strain A19A-1 A19A-1_contig081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 26519 37 100.0 37 ..................................... CACGAACGCTGGAGGGCATCGCCACCTGAGCCCACAG 26593 37 100.0 36 ..................................... CAGCATCCTGACTCTCAGTCATGGTCTTAACAGTAA 26666 37 97.3 35 ........................A............ GATGTTCGGAGGACGTCGATCCCAACGTTGCGCGA 26738 37 100.0 37 ..................................... TAGATGGAAGCAATCGTCATGTTCTGCACGTTGTTTG 26812 37 100.0 35 ..................................... ACACGGTTCAGTAGCCAGCATATCGGCGAAGTTAC 26884 37 100.0 35 ..................................... TAAGCGATAGCGGTGCTGAACCGCTGACCGAACGA 26956 37 91.9 38 ...........T.............A..T........ TCAACGATGACGTGACCGGCAGTCCCGTCGGCGACGAG 27031 37 97.3 36 .................G................... ATCTCATCGAACGTATCACTAGGAACAATCATGGTT 27104 37 100.0 36 ..................................... CGTGCTCACGTCCTCCACGAGGGAGCCTCGTTCCAG 27177 37 100.0 35 ..................................... TCTGGTCGTACTCGTTGAGCCATTTCGAGCTCCTC 27249 37 97.3 38 .................G................... CCCACGCCCGGATTGGCCAGGTTCCGCAGCGTGCTCTC 27324 37 78.4 0 ........A.................CCT...C.CGG | C [27349] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 96.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GCACCAGAAGGTGCATTAAGACCGGAGTCATCAAACTTCCTGCTGGCAATAAATACCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAAACGACAGGCATACGACCTTATTCTGCCGTGGCTTGCGCCTGTCAGAAAGCACCCCGCGTCAGAAGACCTATTGAAGGAACGTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCGGATGGCTCGGCGTGGGAAACGCTCCTGACGCCAAGTCCAGGGACCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAATGCACCTGAGGGGGCGTCGGTGGCGCTTGGCATCAGGACGCCGAAAAGTGGTTAAATAGGGGCGCTGCCGTCCGGCCTCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGAAGCCGTTCCCAGAGGCCGGG # Right flank : GGGCTTGCCGTGCGGTGGTTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCGCCAGCCCCTTGAACAGCCCCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGACGCCGTCCTCCTCGACGGCAACCAAGGCCTCCACCCCAGGTGGATTCGTACCAGGTGAGCTCGCGCGATTCCAGGAACCCTCACGCAGCCAAAACGCCTCTACCGCAGGAGCCGGCCAAGCAGACGCAGACAAAACGGGCGGCACCGAGAAACTCGGCAGCCGCCCACTCACGCCCACTCGTCACCCGCCCACGAGCGGGCAGGCAGTCATGCGACCAGGCGGCCGGGCCGACAACAGCCCAGCCAAGCCGCCCCGCGCGCCGCCCCCGCTTCAGGCGCGGCGCAGCCGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACGCCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGGAAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //