Array 1 125045-121617 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT160626.1 Prevotella phocaeensis strain SN19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 125044 47 100.0 29 ............................................... CATCTATTTCTCGTATTGATACTATTGAT 124968 47 100.0 30 ............................................... AGAGTATAAGCAGTCTTTTGATAAAGTGTT 124891 47 100.0 30 ............................................... CTTCTGTTGATGTACCTTATATATTATCTA 124814 47 100.0 30 ............................................... ACTGTTCATTTTGATCAGTTGTTGAAATCT 124737 47 100.0 30 ............................................... GGCTAATGGTTTATGGTTGTATGCCTGACA 124660 47 100.0 30 ............................................... TACAGTAGATAGATTATTTAAACAAGCATA 124583 47 100.0 30 ............................................... AATTCACTTAAGGACGAGGAAAAATATATT 124506 47 100.0 30 ............................................... TTCCTTCGCGTTATATTTCATCTCCTGAAG 124429 47 100.0 30 ............................................... CAAACGTCGTGTCTTTGTCAACGCCGCTGA 124352 47 100.0 30 ............................................... ATAATCTCATCGGGCGACTTATTGAGTTCG 124275 47 100.0 30 ............................................... TTAAGAGCTACAAAAGGCCCAACAAGATTC 124198 47 100.0 30 ............................................... TTATTTTTATTAAATAATATGCGCCAAGTG 124121 47 100.0 30 ............................................... ACTGGTCATCCAGATAAGAATGGATATTTA 124044 47 100.0 30 ............................................... TCTAAAGCCTTTAATAACGCCGTTCGGAAT 123967 47 100.0 30 ............................................... CAATGTATCTCTTGATGAATATGTTTGTTT 123890 47 100.0 30 ............................................... TAATAAGGAGGATTAATTAAGCAAATCTTC 123813 47 100.0 30 ............................................... TGTTAGCCAACTTGTAAGAGAAGAACAGTA 123736 47 100.0 29 ............................................... TCGACAGGCTTACACTTGTCTGTCATAAA 123660 47 100.0 30 ............................................... ATTCCCCAAAATAAACATCACCATGCCGAA 123583 47 100.0 30 ............................................... CAAGAATAATTATTTTATAATTTTATATTT 123506 47 100.0 30 ............................................... CACTTTGTTTGTGCATACTTGATGTTGCTC 123429 47 100.0 30 ............................................... GGTCAGTACAGCGGGGCAAGCTGTGTTTTT 123352 47 100.0 30 ............................................... ACACCGGGATAAATACCACGAAGTTCGTAA 123275 47 100.0 30 ............................................... TGCTGATTTTCAATGGTTTTTTGCTGTGCG 123198 47 100.0 30 ............................................... TGCGAGCTGTAATAAGCAGAATAAAAAGTA 123121 47 100.0 30 ............................................... TGGTTTGAGTACTACTAATATGGCAGATGC 123044 47 100.0 30 ............................................... TCCTCTATCGACGACATCTTCAGTAAAGCC 122967 47 100.0 30 ............................................... TGTGCCGATTTAGCGGCTTTTTCGCCCTCT 122890 47 100.0 30 ............................................... TCAGAAACACCGTATCTCCTTTTACATACC 122813 47 100.0 29 ............................................... CCTGTTGTCTCGTTCTTTGGCAATGTTTC 122737 47 100.0 30 ............................................... AAGTCACTATTTGCTATCATAGGTACATGT 122660 47 100.0 29 ............................................... CCTGTTGTCTCGTTCTTTGGCAATGTTTC 122584 47 100.0 30 ............................................... TGCCTTCGCGGCGGTTTACGTGGGAGGAGA 122507 47 100.0 30 ............................................... TACGCCGGCTGCCAAGGCGTACATCTTCTG 122430 47 100.0 29 ............................................... GAATTTCGTCAAATTGTCCCTTTGTTAAT 122354 47 100.0 30 ............................................... TGTCACATTGGAGGATATCGAGAACAAAAT 122277 47 100.0 30 ............................................... TTGTCTATGATGGTAACATAATTCGTACCA 122200 47 100.0 30 ............................................... AACGCATCGACAAAGACTTTTTTCAGTCCT 122123 47 100.0 30 ............................................... TGGTTACTTGTCGGGTATTCAAAATAGACA 122046 47 100.0 30 ............................................... TTAAATGATTTGCGGTATTTCCATAATTGA 121969 47 100.0 29 ............................................... ACCTACACCCTTTACGGCATCGACAATTA 121893 47 100.0 30 ............................................... CATATTTCAAAGTTTATTTATATCTTTGTT 121816 47 100.0 29 ............................................... TGCTGGTGATAAATGTTACTTAGAAATTC 121740 47 100.0 30 ............................................... TATGGAGCACATCGGCACCTCTCCTCTATG 121663 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 45 47 100.0 30 GATGTTTCCAATATTGCAAAGATACTAATTTTAAAGCAAATCACAAC # Left flank : AATAAATGCTTCAACGGAGAACTTCGTAAGATTTCTTATCCTGAAATAACACCATAATGGATAGACTTAGCGAATATAGAGTTATGTGGTTACTTGTTCTTTTTGATTTGCCGACAGATACAAAGAAAGACCTTCGGGCTTACACGCTTTTCAGGAAGAATCTAATAAAAGATGGCTTTACTATGTTTCAGTTCTCTATCTATGTGCGTCACTGTGCAAGTATGGAAAATGCAGAAGTACATAAAAAACGAGTAAAGTCATTCCTGCCTGAGTTTGGAAAAGTCGGCATAGTGTGCCTCACCGACAAACAATTCGGTAATATTGAATTATTTTTTGGCAGTAAGCCAATGCCTCCAAATGCCCCCGGTCAGCAACTGGAACTCTTTTAATACAAAAGCGAATTCCATATTTTAAATGGAATTCGCTCTCTAAGAAACATCACTTTTTCTTTTTCTAATATCGTTATAAAACATTGGACCACAAAATATTATGCATCTCCT # Right flank : TAAAAAGGCAAGAAAAACAATGAGATTATTTCCGAATATTATGCAAATAGGTATCATTATCAGGATTGCCACAGGTCATCAAAAAGATATTCCAGCTAATAAGAGCTGCAACATACATCCATGCAGCAGTATCACCCCATTTTATAATTGCAAAGATAACAAGAAATATAGTAGATAGTAAAGATACCATCAACGCCATAAGTGCTAATATATCTTTAAACTTCTTCATAAACAGAATCTCTTTGTGTATACTACGAATATACAAATATAAAATTGGTATAAACAAATAATTTCGGCAAAAAATGTCCAAAGGCGTAAAATTTAACATAAAACTGAATATTGACGGAAAAGAGCAAGTTGTAACAGCCTCTACAAATGTCTAGAAGTTTGCCGAAGAGTTAGAACTGGCTCGTACGAAATCAACACGCCTTAGGAATGACTTATTGAAAAGTACCCAAGTCGGCGCTTCTTTTCAAAATGCATTCACTGAACTTCAACAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTTTCCAATATTGCAAAGATACTAATTTTAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //