Array 1 4661-4387 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFL01000061.1 Skermanella stibiiresistens SB22 contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4660 30 70.0 32 CACA.......TCAT..............A TCAGGTCAGCATGGACCGCGACGTCGCCGCGC 4598 30 86.7 31 G.......T...................AT GATCGTAATGCGCGATCCGGCAAGGGTCGGC 4537 30 90.0 31 G......T.....................C ATGGATCTAGGAAGAAGAGCCATGAGTGGGG 4476 30 100.0 31 .............................. AGATCCCGCGCAAGATCTCGGCTTATTATGC 4415 29 70.0 0 G.......A..CCAC....C.....-..G. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 83.3 32 ATTGACCCCGCGGGAGCGGGGATGGACCCG # Left flank : ATTCGATCTGCTACGTCACCGTGTTCTCGAAGCCGCTTGAAGTGGTGGTGCTCCAGCCCGATACCGCTGCACTGGGAATGCGGATGGACCCCATCCTGACGTCGGTTGACAAGCAGCCTGCAATCGCTTGAAGAACCCCAGATAGTCGAGCCGGTCACGCACCGGTTGGCGGTCGTTCTCCTCTACCAGCCGCTCCAGATCTTTCTGAAATACCGCCAGCTGCGGATAGGGCTGAACCTGCCGCTCGTACCGGGGCGCAGTCTCTCCCGAGCGCAGGTACTTGCTCACCGTCTCCCGCGACAACTTCAGCGACCGGGCGATTGCCCCAACGCTCTTGCCCTTCGCGTGCTCCCGTCGAACACGTGCAATCGTCTCCACCATCAGCATCCTCGCATGACCACCCTGACGTCCAATCCAGGGTAGAAGTCTGCCAGATCACGAGGTGGTCGGGTTTTGGACGCCGATCACCCCAGAAACCGGCCTACTTTTCCACGCCGATG # Right flank : GAACCCCACCGGTCCGTCACGGATCACCAGGTAAGGCGCGTCGTCGAGCCCCATGGATGGGTCCGATCCATCCGTCGCGGAACCGGGGATTCCGATGGCGGCGTCCCGTCGGCGACCGGTGGTTCGGGAGTCCGCTGATCGGGACCGGAATCATCCAGGTCGCCGCGCGGCCCGGTTTCCCCATGCGAATGGCGGCCAGCGAGGACATGGATCGGTCATGCCACGCCGCTGTCGGCAAGGTCGGCCAGAGGCGCGTGTTGGCTGGGAGGAATCCGGATTTTCCCAATCATCGTGTGGGGTGCCGCCATGTTTTCCGGATGGCGACCTCCCATGTTTCAACTGAAACACGATTGTCCCAGGTTTGAAGCGTCCTCGTAACTTGGCTCCGACACGGTCCAACACCGGCTTCACGGCGGACTGGAGATGATGTGGAAGCTGGACGCCTTGTCGCGAAACCAACCCTGGATGATCCGAATGAAAAGACCGCGTTGTATCCGTGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGACCCCGCGGGAGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 166690-167980 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFL01000010.1 Skermanella stibiiresistens SB22 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 166690 32 100.0 34 ................................ ATGAAAGTGTACTGTGTCCCCACATCGCTAGGGC 166756 32 100.0 35 ................................ CTGCTGATACTCAAGTGCCGCGACGAAATCCAGAC 166823 32 100.0 34 ................................ CGGAGAAAGCCCCGGCAGCCACGAAGGCGCCGGG 166889 32 100.0 34 ................................ GACGGATCGATGCGCCAGTTGACGCTGATAGCCA 166955 32 100.0 34 ................................ CGTTGCATGGCCTCATGGACTACCAGCGCAGCCT 167021 32 100.0 34 ................................ TTCGCCATCTCTTCCCAATGCGTAATCCACGGGG 167087 32 100.0 35 ................................ TTGGTATCCGTCTGGTCCTCAATCTTACGGACCAT 167154 32 100.0 33 ................................ GCGGGCGCGCATCGCGGCGAGATCGACTGTCTC 167219 32 100.0 35 ................................ TCGACCACCCCGACCTCGGCCCCGCCGAACCCCTC 167286 32 100.0 34 ................................ CCTCGTTATAAGCGGCCTCTTCGCGTTGAGCCTG 167352 32 100.0 35 ................................ GCCGGGTCGATCAGCACGGGCTCGACGTTGGACGC 167419 32 100.0 34 ................................ GTGAATGTCATATGCGCCGCGTACCTGATCAGCG 167485 32 100.0 33 ................................ CGTCACAGTCTCTGGTGGCTACGCCTATGTCGC 167550 32 100.0 34 ................................ CGCTCCACCGGAACGACGCGGAACCCAGCGTCTG 167616 32 100.0 35 ................................ TGGATCGGTCATCTGGCTTTAGACATCGCACGGTG 167683 32 100.0 33 ................................ TGGATGGTGACCGGGAACGTCGCGCTGGTGGTG 167748 32 100.0 35 ................................ CTGGCAGCGCACGCGACATAGGCGTAGTCACCCGA 167815 32 100.0 34 ................................ GCTGACGGGCAGGCACGCCAGCATCGCCGTAACG 167881 32 100.0 36 ................................ TCCGACGTCATGGGCGAATTCCTGCCCAATCTCGCG 167949 32 78.1 0 ...............A...A......C.TGGT | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 98.9 34 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : AAATGAGATCCCCATGCTGATGCTGATCACCTATGATGTCCGAACCGAGGACACGGCGGGCCGCCGCCGGCTGCGGCGTGTCGCGCGGGCTTGCCTGGACTTCGGCCAGCGCGTCCAATTCTCGGTGTTCGAATGCGAGCTGGACCCGGCCCAATGGACGGCGCTCCGAGCCCGCCTGATCGGCGAGATCGACCCGGCGACCGACAGCCTCCGCTTCTACAATTTGGGCGCCAACGCCAAGTGGAGGATCGAACACGTCGGCGCGAAACCCGCGCAGGATTTCGACGCGCCGCTCATCTTCTGACAGACCTTTCCGTCCGTCGCGCGAACCCCAAGCGGTTCCAGATTCCCTGGGAGGTTCGCGCGGGTGAATTACCTTGCATTTTCAACGCATGCTGTCAAAGTTCGGCAGGCATCGCCCTTCCGAGGCTTGATTAACGCGATGGGTTCGCGCTGGACCGGGAAATCGGCGTTATTTGACAATAGAATAGACTGAAGCA # Right flank : TCGAACGCCATCTCCAAGGGGGATGGGCAAGCGCCGCCGGGCTCGGTTCCAGCCTATCTCCTTGCAGACACACAGGAAAGTAATCCTTTACTATTTCGCGTTAGAGTGCCCCTCGCGTTTCGACGTCGGATCTTTGACAATCGAAGACCATGCCGAGGCGAATCTTCTGCTCAATGGATCCCCTGGACCAAGTCCGGGGATGACGAATTGTAGATAGAATAGGGCCGAACCACTCCTTTATCGTCATCCCCGGACTCGATCAGGGGATCCATTGAGCAGGAATGCCTTCATTCCAAGCAAAATCAGCGCCTTGGCAAACCGCCCTCGTCAAAATGATGACATTTGCTGTCGCTTCACCACGCCAAGGGGGGTGTAAGCATCGCGCCTCAGAACAAGCTCGCCTGCCGCTCCGTCTTCTTCCCAGTCTCGGCGGCCGGCGCCTCTCCCTCCCCCGGAATCGCCACCGGCTCCACCAGGGACGCGTCGTCGTTCCGCACGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //