Array 1 168937-167076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYM01000006.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N40386 N40386_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 168936 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 168875 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 168813 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 168752 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 168691 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 168630 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 168569 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 168508 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 168447 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 168386 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 168325 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 168264 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 168203 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 168142 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 168081 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 168020 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 167959 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 167898 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 167837 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 167776 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 167715 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 167654 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 167593 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 167532 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 167471 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 167410 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 167349 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 167288 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 167227 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 167166 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 167105 29 93.1 0 A...........T................ | A [167078] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11172-10412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYM01000017.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N40386 N40386_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11171 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 11110 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 11049 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 10988 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 10927 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 10866 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 10805 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 10744 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 10683 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 10622 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 10561 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 10500 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 10439 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //