Array 1 53514-54885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFJ01000005.1 Salmonella enterica subsp. enterica serovar Ohio strain 01-0557 NODE_5_length_190462_cov_3.96025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53514 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 53575 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 53636 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 53697 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 53758 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 53819 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 53880 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 53941 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 54002 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 54063 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 54124 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 54185 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 54246 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 54308 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 54369 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 54430 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 54491 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 54552 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 54613 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 54674 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 54735 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 54796 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 54857 28 93.1 0 ............T..........-..... | G [54874] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71172-73032 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFJ01000005.1 Salmonella enterica subsp. enterica serovar Ohio strain 01-0557 NODE_5_length_190462_cov_3.96025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71172 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 71233 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 71294 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 71355 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 71416 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 71477 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 71538 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 71599 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 71660 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 71721 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 71782 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 71843 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 71905 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 71966 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 72027 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 72088 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 72149 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 72210 29 100.0 32 ............................. GCCCCGCTGTTAAAACCGGTTATCGCTGCAAT 72271 29 100.0 32 ............................. ACCGCAAAGAGGCGCTGAATCATGAAAATCAG 72332 29 100.0 32 ............................. ATTTTATTGCCACTATTCCATTTCACCAACGG 72393 29 100.0 32 ............................. AAATCAAGGAGAGCGGCAACAAAGAGCCAGAA 72454 29 100.0 32 ............................. GATATCTATAACCATTAGCCCATGATTTAAGA 72515 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 72576 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 72637 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 72698 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 72759 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 72820 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 72881 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 72942 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 73003 29 96.6 0 ............T................ | A [73030] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //