Array 1 42120-39529 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZM01000013.1 Escherichia coli strain 11-1BK entry13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42119 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42058 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41997 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41936 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41875 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41814 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41753 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41692 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41631 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41570 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41509 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41448 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41387 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41326 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41265 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41204 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41143 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41082 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41021 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40960 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40899 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40838 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40777 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40716 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40655 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40594 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40533 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40472 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40411 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40350 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40289 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40228 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40167 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40106 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40045 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39984 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39923 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39862 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39801 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39740 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39679 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39618 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39557 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1806-250 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZM01000054.1 Escherichia coli strain 11-1BK entry54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1805 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1744 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 1683 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1622 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1561 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1500 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1439 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1377 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1316 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1255 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1194 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1133 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1072 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1011 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 950 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 889 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 828 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 767 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 706 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 644 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 583 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 522 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 461 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 400 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 339 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 278 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //