Array 1 7957-8186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVH010000039.1 Phocaeicola massiliensis strain D53t1_180928_C12 NODE_39_length_41787_cov_17.3271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 7957 32 100.0 34 ................................ TGATGCTACATCCACCATGAGCATGGTATTTATG 8023 32 100.0 34 ................................ TCCATACAGCGAGAAGCAATACTTAACCAATACA 8089 32 100.0 34 ................................ TCCATACAGCGAGAAGCAATACTTAACCAATACA 8155 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTCTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGGCTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : CTAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGATGCCGGACATGAAGATAGACAGGTTTACCACGCAGAGAAAACTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGCTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATATCGAAATATTCCATTAAAACTTCAGAGAAGATTATCCGAAGTAACTTATGCAGACTACGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTATTTGGATAATCTACACGGATCACCCACAGGATTTTCGGATTAA # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51164-47969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVH010000028.1 Phocaeicola massiliensis strain D53t1_180928_C12 NODE_28_length_65513_cov_23.5951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 51163 47 91.5 29 A...............A.............A..............G. AATTCGCGTAGCTTATCCCTGTCGGTGCC 51087 47 97.9 30 ................A.............................. TGAAGATAGGATGGGCAATAAAAAACCTTT 51010 47 97.9 29 ................A.............................. GCTATACATAATATAAAAGTTCATCATGG 50934 47 97.9 30 ................A.............................. TAAATGTTGATAGAGGTTTTACACGTTATA 50857 47 97.9 30 ................A.............................. GAATGGGTGGAAAAGGCATGGCGTTTCTTG 50780 47 97.9 30 ................A.............................. TTCTTTTTATTAATATGGCAAGCCGTCACG 50703 47 97.9 30 ................A.............................. ATGGAAGCAGAAGTAAAACAAGTAATCAAG 50626 47 97.9 30 ................A.............................. TCAAAAATTACTTCTAATATCTTTTTTTAT 50549 47 95.7 30 ................A............................G. TAGGCAGCCAAGAAGGATTAATTCAATACG 50472 47 97.9 30 ................A.............................. TGAATCTATTCAGAATCGAAAAAATCAAAG 50395 47 100.0 29 ............................................... GCCATATCCAAATAACAATCAAAATCCAA 50319 47 100.0 30 ............................................... GTTATCTGAAAAAAGCGGAGGAAGAGGTAA 50242 47 100.0 30 ............................................... TCGAGTCGTACGTCAATACCTGTCCTTCCT 50165 47 100.0 30 ............................................... CTCTTGGGTCGCATAATCTTCGATTGGCGA 50088 47 100.0 30 ............................................... ACAATACATTCGACCTCTATAACGATAGAA 50011 47 100.0 30 ............................................... TAATGCCTATTAGTGATGCTGAAGGCTATG 49934 47 100.0 30 ............................................... CGGGAGGGGAACCTGATACTCAACGAGGCT 49857 47 100.0 30 ............................................... GTAAAAGAGAGTTTCCAATTAGTCATTTTC 49780 47 100.0 30 ............................................... GGAAACTCATAGTTGCACCTAACGAAGCTC 49703 47 100.0 30 ............................................... TTTTATCCATTCTTTATTTTCCATCTATAA 49626 47 100.0 30 ............................................... TAACCTGAAACAGGGTATCAAAAGTATTAT 49549 47 100.0 29 ............................................... CATCGGCAGATATGCAGTTTTTAGAAAGC 49473 47 100.0 30 ............................................... TCATTACGATTAACCAAACGAGGGATGAGT 49396 47 100.0 30 ............................................... GGGGATTTGTTCCCGGAACAACAGGATTTG 49319 47 100.0 29 ............................................... CACGGATGTGGCTTACAACATGGTTTATT 49243 47 100.0 29 ............................................... TATATCAATAAATCACAAATCGAAGAACG 49167 47 100.0 30 ............................................... AGTTCAGCAGTGGTGCAGAAATAGATGTTT 49090 47 100.0 30 ............................................... TGGAGAGGACGACAAAAATTATGCAAGAGT 49013 47 100.0 30 ............................................... TATTTGCGTCATCTTATCGCACACGTTGCG 48936 47 100.0 29 ............................................... TACAAATCAATCACCTATTAGAGTTATGG 48860 47 100.0 30 ............................................... AGATACGGAAAAAATAAAACAGGACATCAA 48783 47 100.0 30 ............................................... ATAAATGGGATATTGCATTAGACGCGATGG 48706 47 100.0 30 ............................................... AACACAGAACCCAACCGTAACGCCAAGGGG 48629 47 100.0 29 ............................................... GTTATGGGGCAATTCCTAGTAGGAAGCGA 48553 47 100.0 30 ............................................... CTTTCTCGTATAGGCCTGCATAAGCCCCAT 48476 47 100.0 29 ............................................... TGATACATTCAGTGAGGTGGTAGATAAGT 48400 47 100.0 30 ............................................... CAGCCACCTACATTGAACCAGTTACCAAGT 48323 47 100.0 30 ............................................... TGTCACCCACATATGGGTTGAACCGAAGCC 48246 47 100.0 30 ............................................... ATATATCGGATACCGATGTTGTTATCAACT 48169 47 100.0 30 ............................................... GAGACCAACAGGCTGTTAAGGCTGTCAACA 48092 47 100.0 30 ............................................... CATCCAGTTATCGTACACTTACTAATGCGG 48015 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 42 47 99.3 30 GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : TGAATATATGTTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //