Array 1 262-496 **** Predicted by CRISPRDetect 2.4 *** >NZ_VACX01000029.1 Campylobacter jejuni strain MON371 999800029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 262 37 100.0 29 ..................................... TATCTTCTTTATAGTAAAAGATTCCATAA 328 37 100.0 29 ..................................... CCAAGATCCTTCTATTTCGAAAATAGTTT 394 37 97.3 29 ...........C......................... TTTGCAATTATTAAAACAAGTTTGAAATA 460 37 89.2 0 ......................T..T..G.......A | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 96.6 29 ATTTTACCATGTAAACAATTAACAAGAGACTAAAACC # Left flank : AGATGATTATTCCTGCAGCTTATAAGCAAAGAGTAGTTTTATACATTCCTTTGAAACTTCAAGAAGAATCAGTTGATACGATAGTTGTAGTTGAAAAAGAGGAAGTTAAAAACGAACAGTATTACGCTGTGAGAACTATACTAAATCCGCATGATAATATTTACAAAACTGCAAGAGTTCTTTCGATAGTTGAATCTGAATGGGTAAAAAACACCATTTGAAAGTGAAAACATTGGTAAAATAGGCTTTTGAGATAAGTCTA # Right flank : AAAATTTTTGTAAATTAAAACAATTACAAAAAAAATAGAAAAGATTGGCAAAAAATTAGAAAAGCAAAAAACAAGATTCGCTATAATAAAAAATCCGCTTTAGAGCTGCAACTCTAGCGGAAAATTACAACAAAGGCTAACTATGAAACGACATAGTAAGCGTTTTGTGAGATTATACCTAAATTTTAGGTTTTTTAAGCTTAAAGTTGAAGTATTTTTCTAACAAAACCGCAGGGGCAGAAAAGCCCCTTGCCTTTGTTAGTACATGAAACTACAAATTCTCATTCATTTTTCCAAGTTAAATAAAAAAGAAATCCGTTTCAAAATCCCATAAAATAGGCATTTTATAGCATAAATACTTGCAAAAATTATTAAAAAATGGTATTATCATGTTAATAAACTTTAAAAAGGAAATTATAATGCACACTATAACCATTACAAGTGATGATATTGATTTTATAAAAAGTTTAGAATGTTTGTCAAAAAATGCAGGAGCTATT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATGTAAACAATTAACAAGAGACTAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 78902-79069 **** Predicted by CRISPRDetect 2.4 *** >NZ_VACX01000026.1 Campylobacter jejuni strain MON371 999800026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78902 36 97.2 30 T................................... CATAAGGATATCAAGCCATTAGAAAGAATA 78968 36 100.0 30 .................................... CGATGTAGTAATTTTTCGTAATAGCAATAA 79034 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTCTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAATTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGG # Right flank : TCGATATTTACCAGATAATGAAAATTTCAGGGTTTTTTAATAAAAATAGCAAAAATTGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCTCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGGTGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCGGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTGCT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //