Array 1 207635-206958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036001.1 Bacillus mycoides strain BPN37/1 plasmid p226 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 207634 32 90.6 34 ....T........A....A............. AAAAGATGTGTTATATTTTATGTAAGACTTGCAG 207568 32 96.9 35 ...........C.................... CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 207501 32 100.0 34 ................................ CGTCAAGTGCTGGAATCTGAACAGCATGACATGG 207435 32 96.9 35 ............A................... TGATTATAGCAAAAAAAGGGGACAGAATATAAGAA 207368 32 84.4 34 .C..T......A.......T.....A...... ATTGCTCATTCATCAAAAGTTTTCAAAATTACTT 207302 32 87.5 33 T........T..A........A.......... TTAAAGAATATCCGAAAAAAACCAATAATATTT 207237 32 90.6 35 .........T.C....A............... TCTTTGCAGGTTTGGGAAAAAGGAGATGTATTAAT 207170 32 87.5 33 .........T.C.A.....T............ CAGGATATTTATGGGCACACAGCAGCTATTAAA 207105 32 87.5 18 ..T........A.........C......G... ACAATGTACAACCAGTTT Deletion [207056] 207055 32 90.6 34 ...........CA.G................. AACAAGCCAATGGTGAACAAAAAGAAGTCTGTCA 206989 32 90.6 0 ......T...A...............C..... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 91.2 33 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : TTGACATTACTAGTATGCAGAGTACGAAAAGTGTAAATTCTGAGCCTGAGAAGGAGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCAGCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAAAAGATTAAAAATGCACTAGTTACATTGTTTGAAAATAATGCGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTATACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAATTGATGACTATAACATTTTGGTAAATGAATTAGATAGCTTAAAAGTTGTGATTATTGATGGACTGTAATGAAGAAAACGTTAGAATGATTGAAGGAAAGCGTATTTATTAAAAAGCTAATCAACCATTTATTAAAGAAAA # Right flank : ACATAAATATTTCATCCATACCGGATTATCTTCAATTACATCCCTTATTGGTGCAAGGATTAAAATCTTAGTAGGTGAGAACGTATAGCACACATGAAATGTCTCGTACATTCGCACCTGAATTTTTATAATTTATGAGTAAAATTTATGATTTTCTATACAAATTTTTTTATCAAATAAAGAAATTGTATATTTTTGAACAGAATTAACGTATTTTTGTATGATTTTGAACAAAAATCGGTGTCGCATCTTTCATGGGTGCGTGGATTGAAATCACTTATCTTTTTAAATTCTCCTTATAATACTTGTCGCACCTCTTATAGTTGCGTGAATTGAAATCGCTAGTGCTAAACGTCTAAAGGAATTGTATGGGCGTCACACCTCTAGTAGGTGTTTGGATTGAAAGTGGTAAGACACTTGATAGTATTTTATTAAGCCTTAACGCATTACCCAAATACCTTTTGACTAACGTCCTTCACAATCTTGAGGAAGAAGGATTC # Questionable array : NO Score: 6.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:-0.10, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 208779-208220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036001.1 Bacillus mycoides strain BPN37/1 plasmid p226 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 208778 32 100.0 35 ................................ ATGTTAGTGACGATGAGTTACACAACTCAAAAAGC 208711 32 100.0 32 ................................ AAGGAGCTGGGCCTACAATACTAATAATCTTT 208647 32 100.0 34 ................................ TTATATAAGTAGTCCAAATAATAACAGGTTTAAG 208581 32 100.0 34 ................................ TATCCCTCTAAAGAAATTCAATGTATCTATTACC 208515 32 100.0 34 ................................ TCAAAACATGGTTTTTCGTGACATGTTAAGGCAG 208449 32 100.0 34 ................................ ATTGGAAGTGTTGAAGAAACAGAAAGAGAAATTG 208383 32 100.0 34 ................................ ATCTGACCAACCAGGAGGTTTGCCATTTGAGAAA 208317 32 100.0 34 ................................ TGAAGTTGTGATTTTGGATGGTGACGGCAATACA 208251 32 87.5 0 .......................A...A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 9 32 98.6 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAAAACAACAAGACACAGGTCCTTATCGATATAAAGACCTTGATTATTCTTAATAAGTAGGACTCCTTTGGCGAAAATTTTCGAAAACATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATTAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCATTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTCTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTAAACAGAATTAACGGATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : TGATAAGATGCTTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGGACCTGCTTCAATTCATACAGCAACTAGTGTTGATCCAATTGACATTACTAGTATGCAGAGTACGAAAAGTGTAAATTCTGAGCCTGAGAAGGAGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCAGCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAAAAGATTAAAAATGCACTAGTTACATTGTTTGAAAATAATGCGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTATACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAATTGATGACTATAACATTTTGGTAAATGAATTAGATAGCTTAAAAGTTGTGATTAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 211561-210871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036001.1 Bacillus mycoides strain BPN37/1 plasmid p226 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 211560 32 100.0 32 ................................ TTATAACAATGCTTTAATCTTTGTTACTCAAA 211496 32 100.0 34 ................................ CCTGTTGGTCATGATTATATGATTATACGAAAAT 211430 32 100.0 32 ................................ ATGCAAGCAAGTTTATTACAAACTATTGGTAT 211366 32 100.0 34 ................................ TCTAATTCTGTTGTGAAATCCGCAAAGGAATCAT 211300 32 100.0 33 ................................ TTTCCATGCGCTGTATTTGATACGAATAACGGC CGT [211281] 211232 32 100.0 34 ................................ ATTTTAGCTTTAGTACGAATTGTATTACAGTTAG 211166 32 96.9 34 ........................G....... TACGTTACAAAGTCACCTATGAAAATGTAAAAAT 211100 32 87.5 34 ..............TA.....G.......G.. CTCCTGAGTTTACCTATCGGTACATACTGGACGA 211034 32 90.6 34 ............T........C..G....... GTTTATGCTATTCCTACGCTCCACAATTCTCATT 210968 32 87.5 34 A...........G......TA........... TTTTGTCATCACATCGTATTTACTGTACATGCTG 210902 32 93.8 0 ............G......T............ | ========== ====== ====== ====== ================================ ================================== ================== 11 32 96.0 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGTATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAGCGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : CTGTCAATTTCTTAACGAGGACTCGGAGCGTAAAATCACATCTCTTGTAGGATTGTGATTAGATTAAACAAATTGAGTTAAGAATAACTTTTGCAAACTTTTAGAATAAAAATGCTTTTAGAATGCTAAACAAATTATATCCAAATCGTTATACGAGAGATATGCTTACTTCCTTACGACCAATGAGATAAGCAAACGCTTATTTACATCAAATTAGATATGTAAAATTTTAGAAGCAAATTTTCAGTTTATAAAAGGAGGTTAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATCAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACATGATATTCTCTGTTTTGCAAATACAGTTCATGAAAAAGACTGCTATATAATAATTGGAGTATCAGATAATGGAGATATAATTGGGATAAATAATGAAAATAGAAGGGAACAGTCAAGTGTACT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 220503-219944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036001.1 Bacillus mycoides strain BPN37/1 plasmid p226 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 220502 32 100.0 33 ................................ TTCAAAAAGGTAATCTATAGGATTTTTATAATC 220437 32 100.0 34 ................................ ATTAACATGATTTCAGTTGCGTTTATTGGGTTTA 220371 32 100.0 35 ................................ AAGAAACACGCAATGAAACGTGCAGCTAAATTACA 220304 32 100.0 34 ................................ TACACAGACAAGGAAGGCAACCCTACACGCCTTC 220238 32 100.0 33 ................................ AATTAATGATCAACTTTACGAACTGCAAAATAA 220173 32 100.0 34 ................................ TTCTTGTGCTTGTCCATCTGTGAAACCTTGTTGC 220107 32 100.0 35 ................................ TCAGAAGAACAAGCTGAGATGTTTGAAGAGTTCAT 220040 32 100.0 33 ................................ TAGAGAGTCAGGCTCAAGATAACAAAAACTTCG 219975 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.7 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : AATTGAAGAGAAGCAAATTAGTATTTTAAATCAAGAGACTCCTAATAGCATCGAGTTTTATATTGAAAAGATGAATACGTATAAAGAAAAGAATAATAAAAGTATACGTGAGTTAGCGAAAGAAATTGATATTTCGTATTCAACGCTTTCTAGGATGTTATCCGGTAAAAGGAAACGATTAAATGATGATACAAAGAATAAGCTTGATAAGTGGATAGAGAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAGGCTATTGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCTCTTTAATTTTTTAGGTGCGAACGTATAGTACACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTACCGTATTTGTGTGTGATTTTGAACACAAATCGGG # Right flank : ATCACAAGATTGAGGAAGAAGGGGTTTTTAAGGTAATACTTTAACTTCAAAACAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAATCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTGTTATATCAATTATTCCATACAGAAAATATCATTCCTTATAAAGGAATACTATCTGAGATAGTAGGAAATGCTATTATTTCTCACCATGGATACCTTCAAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //