Array 1 1082297-1080798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014230.1 Desulfomicrobium orale DSM 12838 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1082296 37 100.0 39 ..................................... GGGGTATAATGCAGCTCCTGGAGGAGGCGCAGGCGGGGA 1082220 37 100.0 40 ..................................... ACTAATATTGCCTGTTTCTGCCTGAGCTGCACCTCCTGCC 1082143 37 100.0 39 ..................................... GCCGTCATCGTCCGTCGTCACCTCGGACTTTTGTGTGAG 1082067 37 100.0 39 ..................................... GCAGAAAGTAGGCCATTGGAGCAGGCCCGAACAACCGGC 1081991 37 100.0 39 ..................................... TCGGTGCGGCTGGACGTGCTGACGGACGCCTCCTTGCCG 1081915 37 100.0 40 ..................................... GACGTTTTATCATGCCTCCTCCTTAATCCCTGATTTTATC 1081838 37 100.0 40 ..................................... ACCACCCAGTTATTTGTTCTTATTGTGGTAAAGCTATAAG 1081761 37 100.0 38 ..................................... GCGCTCAAAACGCCGGCGTACAAATCGCTCTGTGTTGC 1081686 37 100.0 39 ..................................... GCAATTTCATAAGTATCCATAATTTTCCTCTTTTTTTAA 1081610 37 100.0 40 ..................................... GAGTGTATTCATATTCCCCTCCAATTTTTTAAAAAAGTTA 1081533 37 100.0 38 ..................................... AAATATGTTTATTGGGTAGGTGCACAATGTGACCTATC 1081458 37 100.0 42 ..................................... GCAGTAGGGTCGTCGATCGCCAAGCGTGCAACGACTTCGGGC 1081379 37 100.0 40 ..................................... TACTCATTTATTATTTTTTCCTTTATATTTTTAATAAATC 1081302 37 100.0 42 ..................................... AAATATATAAATATAATTGTTTAGTTAAAAACAATATAAATA 1081223 37 100.0 42 ..................................... TCGGTTCTTATGCTTATGTTCATGATGGAAAATTCACACTCA 1081144 37 100.0 42 ..................................... AAAGCTCGTCACCTCTGTTCTTCGCACCCTGAAGTTTTTCAC 1081065 37 100.0 41 ..................................... GCTGTCCTGACGCATATCCTCCGGCCGCCGGTTTGGACTCG 1080987 37 100.0 40 ..................................... GCTGTAACCTCAATTGCTCATTTTCCTTTTTCATTTTTGA 1080910 37 100.0 39 ..................................... AGCCCACACGTTGTCGCGGTCTTTGATTTTTGAAAAAGG 1080834 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 40 ATATCACTGCATGACCCGATAAAGAGGGGATTGCGAC # Left flank : AATGCGTGGAAAACCATTGCGGTATGTTATCTGTTATGACATCCCGGACGACAAGCGGCGGATAAAGGTAGCCAGGTGTCTGGATGGATATGGGGACCGTGTTCAGTTCAGCGTCTTTGAGGCCCTGATTGACAATACGCTCATGGAAAGGCTGGCCGGCGAACTGGAGGAACTGATCGACGAGGCGGAAGACAGTGTCCGTATCTATCCCATGTGCTCGTCCTGTGCGGCCAAGGTTCGCAAGTTGGGAGTTATGCAGCCGGGGCCGGAAGTGGGTGAGGAAATCGTTTTTATTGTTTGAAGCCGATTCCTTCGTAACCAGCCGGGCCAGCAAAAGATGCCGGTGGTTACGGCAACAAAATTCTTTAATAATTTCATGGAGGTAGTTGTGATCGAGGAGTATTCTCCCGGAATTTTTATTCGAGATAGCGACAGGCTCGTACCGGTGACGGAAAACGTGACAGCCAGTCCCTGGGAAGAAACGTGTTTGAGACCGCGCC # Right flank : TCAGTTCGGCGAGCTGTTCGGGGTTGAGAGTTTTGAAAATGGGTCATGCCTAGTCCGTGAGTCTCCATTCGACTATAAGGCTAGTCACGACAATGAAAAACAAGTATGCGAAGCGTTCAAGAATTTCAGAGGCCAAAGTCCGACAAATAGTGAAGCTGTTTGCCGTGGATTTGAATGCCCTGCAGATAGCTGAAATAGCCGGGGTAAATCGTAATACCGCGAACCGTTATCTGGCTGCTTTCCGAGAGAGGATTGCCCGGTTCTGCGAGGCGGAGTCTCCTGTTCAAGGCGAAGTTGAGGTTGATGAAAGCTATTTTGGCGCACGCCGCGTTAAAGGAGTCAGAGGCCGAGGAGCCAAGGGCAAAACCATTGTGTTCGGCTTATTCAAGCGTGAAGGTCGCGTTTATACCGAAATTGTCCCGGACTGTTCAAAAATCACCCTCCAAGGGATCATCCGGGGCCGCGTGAAACTTGAAAGCATTATTCACTCTGATGGCTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATCACTGCATGACCCGATAAAGAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2228902-2227050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014230.1 Desulfomicrobium orale DSM 12838 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2228901 33 97.0 33 T................................ AGCGGTTATTCTATTCACTGTAGTTTTGATTTT 2228835 33 97.0 36 G................................ CGCCGGTTGAAACGGCGATCCAGCCGGAACACTGTC 2228766 33 100.0 34 ................................. AATGCTACAAGGCGCAGACAATGGGAAAAGAGGA 2228699 33 97.0 32 T................................ TTTGAGGTTTTTGGATGGCTGTCAAAATCCAC 2228634 33 100.0 34 ................................. TTTGAGGTTTTTGGATGGCTGTCAAAATCCACCA 2228567 33 100.0 35 ................................. TTGAAAATCCAGAGATATAAAACCAGGCAGAGGGA 2228499 33 97.0 35 G................................ AGGGGCATCAGACGGCGCAATGACTCTTCAAAAAG 2228431 33 100.0 34 ................................. TTCGGCTCGATGAGCGGCTTTCCCTTTCCGACCG 2228364 33 97.0 33 G................................ TGCGCCGTAAGCGGCGCATGCACCCACATGTTC 2228298 33 100.0 34 ................................. CCTGACAGGGCGGAAGGGCGGAGTCATGGATTCG 2228231 33 97.0 34 G................................ GATCATGCGTTCTTCGCGCTCGCGGCGGACTCGA 2228164 33 100.0 35 ................................. CTTTTTTCTGGAGTACAGGCATCCCTGTACTCCTC 2228096 33 97.0 36 G................................ ACGAAAAACTGCCGCAACAAGATTTGCGTGCGCTGG 2228027 33 100.0 34 ................................. ACTGATAAGAGAGCAGGCAGAGGTGGTGACGCAC 2227960 33 100.0 34 ................................. ACGTCCGGCGAAATGGCCCCGGCGACGTTGTTCT 2227893 33 100.0 33 ................................. CAAAATTGCCGATACGGTCCACGAGTCCCGCTT 2227827 33 100.0 34 ................................. CCAAGTGTCTGGAACGAGCCAGGGAGATCGAACA 2227760 33 97.0 33 G................................ GGTGATAAGCGTATGACGCTTATTGCTGATGAT 2227694 33 97.0 32 G................................ GTTTTGTTGTTGTGCCCGGCATCCTGCTGGGC 2227629 33 100.0 35 ................................. CTCTCCGGCATACATCGGCACCACCGTCACGGATA 2227561 33 97.0 35 A................................ CTCTCCGGCATACATCGGCACCACCGTCACGGATA 2227493 33 97.0 37 A................................ CCCTTGAAAGCCTTGAAAGGGTTTCCACGGCTGACAA 2227423 33 97.0 35 G................................ CTCTCCGGCATACATCGGCACCACCGTCACGGATA 2227355 33 97.0 37 A................................ CCCTTGAAAGCCTTGAAAGGGTTTCCACGGCTGACAA 2227285 33 97.0 35 G................................ CTCTCCGGCATACATCGGCACCACCGTCACGGATA 2227217 33 97.0 34 A................................ ACTGATAAGAGAGCAGGCAGAGGTGGTGACGCAC 2227150 33 100.0 35 ................................. CTCTCCGGCATACATCGGCACCACCGTCACGGATA 2227082 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ===================================== ================== 28 33 98.3 34 CCCGGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGGCGCAGACGGTCTGAACACGAAGAGGAATGTATGCTGATGCTGATTACTTACGATATTTCGCTGGATGATCCGCAAGGCCAGGCACGCCTGCGCCGTATCGCCAAGCACTGCCTCGACTACGGTGTGCGTGTGCAATATTCGGTATTTGAGTGTGATGTGGCTCCTGATCAGTGGGTCAGATTAAAAGCAAAACTGTTGGATACGTATCAATCTGAAACTGACAGCCTGCGTTTTTATCATCTGGGCAGCAAATGGCGCAGAAAGGTGGAGCACCACGGTGCAAAGGTTGCTTTAGATATTTTCCAAGATACACTTGTTGTATAGCGCCAGTCTGGAGTGCTCTTAAAAATACGGAGGGGTTAGCGAGTTCATTTTCTTTGATAATTCAATAGGGTGAAAGATTAATAAGGTATAATATTCTATCATATGTGCTTTTGTTGGAGGCTTTGGCGAAATAGGGCTGAGAAGCATTTTGTAGCCAGAGTTTCAGCAGAGGC # Right flank : CCGCCAGGGAGCAGGCCACGGCATCCTGATCCGTGCAGCCGCCTTCGGGTGGCTATGAAGCGACGTCAGATATTATCAGGAACCGCCCCAATGCTATAAAAGCGTTATTTCAGCAGGCGGTTGATGATATCCCGGTATTTCTTCTCGATGACGTGGCGTTTTTTCTTGAAGGAATTGGTCAGCTCCTCGCCCAGGGTGAATTCCTTGGTCAGAAAGTAGATGTTTTGAAGCTTCTCGTAAGGCTTGAATCCTTTTTTGGCGTTGAGAAGTTTGTTCATCTCCTCCCGCAGGCGGTCCAGAAGCTGTTTGTCCCTCAGCGCTTCCTCGGTTTCGCCCAGCACCTGGTTGTATTTTTCCCGGACGAACTCGCGCAGTTTTTCCAGATCCGGAACGATGAGAGCGCCCAGCCCCTTCTTGTCCTGTCCCACCAGAACGGCGTCCTGCACGAAAGGAAAGACGGACAGCGTGGCCTCGATATTGGTCGGGTCGATATTTTCGCC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //