Array 1 149559-147943 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK082454.1 Salmonella enterica subsp. enterica serovar Namur str. 05-2929 scaffold1_size751941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149558 29 100.0 32 ............................. CCTTGCAGTTTCCCAGGTGCTCCGGTATTTGC 149497 29 100.0 32 ............................. CCAGACGTACAGCGGAGCTACCAGCGGATCAT 149436 29 100.0 32 ............................. TCGATTATCGTTTGATTCTCTCCGATATTCAG 149375 29 100.0 32 ............................. CGCTTCCGCTCCCTCCCAATAACCCCATATTT 149314 29 100.0 32 ............................. CACACTGAGGAAATGTGCTTCAGGCTGGCTTA 149253 29 100.0 32 ............................. CGTGCACCCGGCATTTTCTGGAACGTGGTCAT 149192 29 100.0 32 ............................. CCGTGACGGTGAAACAGAACGGCGAGTTCTCG 149131 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 149070 29 100.0 32 ............................. ATCAGTCTGGAGAAACAAATTGGGGAGTCATA 149009 29 100.0 32 ............................. GCTGTCACGACCAGTAATGATATTATTATTAA 148948 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACCGCGCT 148887 29 96.6 32 ............................T CAGGAGCAACGGGATCTGGTTGTTGAAAATAC 148826 29 100.0 32 ............................. TTCTTGATGCAAACAATGAAATTTTATTTGAC 148765 29 100.0 32 ............................. CTGCCCTTTCGTTCCTCCGGATAAATCCCGCA 148704 29 100.0 32 ............................. GTGATAGCTGATGCCTAAGAAACAGTTGATGG 148643 29 100.0 32 ............................. CAGTTGAACGACAGTATTACCGAAGCCAAAGA 148582 29 100.0 32 ............................. CACTCGCGAAGATTCATGTTGAGCTTGCGCCA 148521 29 100.0 32 ............................. ATCGACACCGAAACGACCGTCTTTTTTGCGCC 148460 29 100.0 32 ............................. GCCACGATGAGGGTGCTAAATGAAACAGCAGC 148399 29 100.0 32 ............................. CTCGCGCAGGCGGCCAGGGTTTCTCTCGCCTG 148338 29 100.0 32 ............................. AGGGAATACCGACACCTGCCTGACTACCTGTT 148277 29 100.0 32 ............................. AGGCGTCGCATGTGGCGATCCCCATTGGCGAG 148216 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 148155 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 148094 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 148033 29 96.6 32 ............T................ AAGACAACTCCTGTCTTTCCATCACTCGAAGC 147972 29 96.6 0 ............T................ | A [147945] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAGCGCATGATAAGCCGATGCCAGGCGCTGATACATGGCGTTTGCGGTGGCCATTGTCGGCAACCCAACGTAGAGACCGTGGCCTTTATTGGCTGACATTAAGCGGTGAGTCAGAATCAGCGCGGCCTCTGTTTTGCCTGCTCCGGTAACGTCTTCCAGGACAACCAGCTGTGCACCGGGTGCTGAAATATCCAGTTCGCTTGCTCGTTGCTGAAGAGGGGTGAGCGTCTGAATGAACGGAAATAATGCCCGGTGATCTTGATAATGGCTGTGCTGAGATAACGGCGGCATTCGGAGGATGGCCTGTTGGGCTTTTTCACAAGCGAGAGGCCAATAATCTTTCAATGGCATGGCGCTGCTGAGCAGTGGAAACTGGCTTTCATCCGAGCCCATCCAGTCGGCAAGGGTGACAAGCCCAGCGAAAAACCAACTGTGCTGTTTTAAACATTTTCTCCCTGCTTTGGTTTTCCACTCCTGAGGTAGAGTGAAAGGAAATAAT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160708-159338 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK082454.1 Salmonella enterica subsp. enterica serovar Namur str. 05-2929 scaffold1_size751941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160707 29 96.6 32 ............................T TTAAAACTGGCGCTCATTCTTTCCATGCCGCC 160646 29 100.0 32 ............................. CATGCACGAATGACGAACCACAGGCCCCTGAG 160585 29 100.0 32 ............................. GGATCGAGGCGATAAACGCGGTGAACCTCGGC 160524 29 100.0 32 ............................. GTACATACGTCCTTTTGGATTAGCGATGGGAT 160463 29 100.0 32 ............................. CAATGCCCATCATTCCCGGGTTATTCAGCAAC 160402 29 100.0 32 ............................. TGTGTGATTATCCGGAAAACCCTGGAGCCGCT 160341 29 100.0 32 ............................. CACTCGCGCAGGTTCATATTGAGTTTACGCCA 160280 29 100.0 32 ............................. CTTCATGGTGTGTATCACTGATTGTCGAATGT 160219 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 160158 29 100.0 32 ............................. ACGTGGCAGCAGTACGCTTTGGCATTGTCGAG 160097 29 100.0 32 ............................. AATATCGTAGTTTAATATATGCCATGGCTTAC 160036 29 100.0 32 ............................. TCCGGTTCCAGTCTGGCGCAGTTAGTGAAGCT 159975 29 100.0 32 ............................. CTCTTTGGATCGGTGCCGGGCGTATGGCGATC 159914 29 100.0 32 ............................. TCCACCGACTCCGACGAGGACGGCGGCTATGC 159853 29 100.0 32 ............................. TTTGTTAAGGGCGATCCGGTCGAGGCTGCAAA 159792 29 100.0 32 ............................. AGTTATCTGGGGAGTAAAACGGCGTCAGGCGT 159731 29 100.0 32 ............................. GGAAAAAATCGTTAGCAGACGGTTGGGGCAGA 159670 29 100.0 32 ............................. CGACTCCCCATTTTTCTGAATCGTAGACGAAC 159609 29 100.0 32 ............................. TTTGGGTTAATTGGGCACATTGAATCAGGAAC 159548 29 100.0 32 ............................. TCTGTCCATCATCAATCAGCTGCGCCCGGACG 159487 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 159426 29 96.6 32 .............T............... CATTGAAAACTATGTTCATGCCAGCATTTACT 159365 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //