Array 1 53695-54742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPQ010000019.1 Pseudomonas aeruginosa strain PAL1.37 NODE_19_length_107857_cov_18.1658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53695 28 100.0 32 ............................ AGCCCCACGTTGACCAGTGCCGGAATCGACTG 53755 28 100.0 32 ............................ TGTAGCGGCCCGTCGCCAGGCCATCCTGGATG 53815 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 53875 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 53935 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 53995 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 54055 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 54115 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 54175 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 54235 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 54295 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 54355 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 54415 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 54475 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 54535 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 54595 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 54655 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 54715 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66116-63267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPQ010000019.1 Pseudomonas aeruginosa strain PAL1.37 NODE_19_length_107857_cov_18.1658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66115 28 100.0 32 ............................ AAGCTCCTCAGGAGGAATAAGGCCTTCGCTTT 66055 28 100.0 32 ............................ TCCAGACCTACGTTGTTATCGACCCAGTAAGC 65995 28 100.0 32 ............................ AAATCCCGGAGGGCGAAGCGAATGCCAAATTA 65935 28 100.0 32 ............................ TGCCGGGTTCCCCAACGCAGGCCCGATCCACC 65875 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCGACTACTCG 65815 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 65755 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 65694 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 65634 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 65574 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 65514 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 65454 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 65394 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 65334 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 65274 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 65214 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 65154 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 65094 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 65034 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 64974 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 64914 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 64854 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 64794 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 64734 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 64674 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 64614 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 64554 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 64494 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 64434 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 64374 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 64314 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 64254 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 64194 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 64134 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 64074 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 64014 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 63954 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 63894 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 63834 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 63774 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 63714 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 63654 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 63594 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 63534 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 63474 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 63414 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 63354 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 63294 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //