Array 1 195962-197331 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYH01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RT323 NODE_4_length_242594_cov_87.152351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195962 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 196023 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 196084 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 196145 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 196206 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 196267 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 196328 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 196389 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 196450 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 196511 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 196572 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 196633 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 196694 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 196755 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 196816 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 196877 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 196938 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 196999 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 197060 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 197121 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 197182 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 197243 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 197304 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 213464-214635 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYH01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RT323 NODE_4_length_242594_cov_87.152351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213464 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 213525 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 213587 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 213648 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 213709 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 213770 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 213831 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 213892 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 213954 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 214015 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [214057] 214057 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 214118 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 214179 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 214240 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 214301 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 214362 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 214423 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 214484 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 214545 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 214606 29 96.6 0 A............................ | A [214632] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //