Array 1 1010-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFB01000180.1 Escherichia coli strain OU-NP011 sequence180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1009 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 948 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 887 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 826 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 765 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 704 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 643 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 582 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 521 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 460 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 399 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 338 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 277 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 216 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 155 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63673-62730 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFB01000256.1 Escherichia coli strain OU-NP011 sequence256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63672 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 63611 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 63550 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 63489 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 63428 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 63367 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 63306 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 63245 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 63184 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 63123 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 63062 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63002 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 62941 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 62880 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 62819 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 62758 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //