Array 1 629-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXIR01000046.1 Aeromonas sp. L_1B5_3 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 628 28 100.0 33 ............................ TGGCCCGCGCCTGCGCATCAAAGTCCATCCCCT 567 28 100.0 33 ............................ TCTTGTGGGCTCCAGCTTTAGCTTCGTGTTCAG 506 28 100.0 33 ............................ CTACCCCAGCGGCACCCCTCTGATAGTTGCCCG 445 28 100.0 33 ............................ CAGGCTGGCCTTGAGCACTCCGGTGTTTACAAG 384 28 100.0 33 ............................ GAATGGAGCGCTTGGATAGGGTGGTGAGGTTCA 323 28 100.0 33 ............................ TCTGATTGCGGCCAGTGGTAAGCGCATCAATCA 262 28 100.0 33 ............................ CCCGATAACTATAAGCGTGTCCGGTGGGACTGT 201 28 100.0 33 ............................ CCCTACCGCCATGCTGATCCGTGTCACCAAGGA 140 28 100.0 33 ............................ CGCCTTGGCGTCCAGATTGCCACCCCGTGACCA 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GTCTTCCCCACACCCGTGGGGGTGTTTC # Left flank : GAACCTCTGCATCGATCTTGCCTTTTCCCTGACCCGTGAGATGGCTGGGCGCTACGAAAAAGCGCTGGTCTCATCTCGCTTTCGAGAGAAGGTGATCGCGCAGGATCTGCTCGCTAGCTTAGCCAGAGATATTCCGTCGTTACTTGGAGGGGCAAGTACTGATGCTGATAGTACTGGCTAATGATTTGCCCCCTGCGGTACGAGGACGAATGAAGCTCTGGTTTATCGAGCCGAGGCCCAACGTCTTTGTCTCTGGCATTAAAGACTCGGTCGCTGACACAGTGATCGAATACCTCTACCAGCACTGTTCACCGGCAGCTGGTGTGGTGATATTCAAGAGCATCGCCAAAACACCGGGCTATCAGATCCGTTCCATAGGCTCACCGACCAAGACGCTCTGTGAGATAAACGGACTGCAGCTGGTGGTAGAAAAGCTACTCGACCAGTAAGCCAACCACAATCTGTAGCTGGCTTGGCGCGATCTTTAACAATATATCGGT # Right flank : CTGTATTTAGCCCAGCAAGCTGGTTTGGCCTTGGGTCTTCCCCACACCCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87913-86482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXIR01000039.1 Aeromonas sp. L_1B5_3 contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 87912 28 100.0 33 ............................ TCTTTCAATCTTTCCGATACTGCGTTCAGGGTC 87851 28 100.0 33 ............................ CTCATAGCGGCGCAGGGCAGCAGGCACCCGCCA 87790 28 100.0 33 ............................ CGGGTTAGCGGTTCCAGTGAATCGCAGGCGAAC 87729 28 100.0 33 ............................ CCCCAGCCGCCCGCTGGTGATGATGCTGTCGCT 87668 28 100.0 33 ............................ CACAGGGGCCAGTGATGTGATCATTCCGGTTTG 87607 28 100.0 33 ............................ CATAGGCCGTTCGATAAAAGTGGCTTTGGTAAA 87546 28 100.0 33 ............................ CTTCCTCGATAGAGATAGGAGAGCCGAGGAAGC 87485 28 100.0 33 ............................ TGAAGCTGTACTCGAAGTTCTCCGCTTGCTCTG 87424 28 100.0 34 ............................ TGGATGGCGGCCAATCCAAAGTTGGTCAAGGCCA 87362 28 100.0 33 ............................ CATAGAAGAACCGTGGTATCTGGACGCCAAGCC 87301 28 100.0 33 ............................ TGGCGTCGTGACGCTGACGGAGCTGCCAGGCAG 87240 28 100.0 33 ............................ CAGAGCGGCCTACCACCGCGCCAGACGGAGATT 87179 28 100.0 33 ............................ CAACGCATCGAGGGCGGCCGGGATATCACCGTG 87118 28 100.0 33 ............................ TTCGGCGATCCCGGATCAGCCGCGTCACGGCGT 87057 28 100.0 33 ............................ TCCTGCGGTACCCAGGGGGTGACGGTGGTATCC 86996 28 100.0 33 ............................ CTTTCCTTCTCCAGATGGGAGCACTATCTTTTA 86935 28 100.0 33 ............................ CCGGCCAGCTCTGGAGCGCAACCGATCTTGGTA 86874 28 100.0 33 ............................ CTGATGTCGGCGCGATAGCCCTCACCACGATCT 86813 28 100.0 33 ............................ TTTGCTGATCTTGGCCTGACTGAGCTTTCGCTC 86752 28 89.3 33 .C.........C...A............ CAATACCGGCGGGTTCGGCGATGTGACCAAGGC 86691 28 100.0 33 ............................ TTGGCAGCCAGGGTCATTTGCATGCACCTTGCA 86630 28 92.9 33 ..........TG................ CAGGTGCATGGCCTGCCGTCTGGGTTCGATATG 86569 28 96.4 33 ...........G................ CCAGTCCAGTTCGCGGCTGTTCTCTGGAGCTGC 86508 27 85.7 0 ...........G..........-.C.G. | ========== ====== ====== ====== ============================ ================================== ================== 24 28 98.5 33 GTCTTCCCCACACCCGTGGGGGTGTTTC # Left flank : CCGTGGGGGTGTTTCCTCAGTGATTGAGCGTGAAATTGGCTCGATGT # Right flank : GCAACAAATATATCTGGGGAGGTTGTATATCTCTGTAGCAGTAATTGACTGACCTTAGCGCAAGGCACAACAAACCAATTTCCCAACATCAATAAACAAGAGATATTTCAGATGGTTTTTAACCCTTCGGTTCTAAATAAAAAACGCTCGCGCCGACTGCAGAAAAAACTGCGCGTTGGCGAGTTTCAGGAGTTTGGTTTCACTCTCACCTTCATCATCAACCTCCAACAGAAGGGTTTCGAAGAGGCCCTGGATGACTGGATCGATTACGTTGAATCACAAAGCTGGCGCTTTGGTGGCGGCGGTTCATTATTGGGCAACAGGACTGAGGGTTACCTCTGCCAATTTAATAATCGAACCATGACCGAATCTGATCGGGAAGAGGCTGGAAAATGGTTAGCAGCTCAACCCTGGGTGCTCTCATATCAGGTAGCCCCGCTAAGCGATGCCTGGTATGGCCCATGGAAAGATGAGTCCACCACCGTGTTATCAGACACCTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //