Array 1 40942-40060 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BIDK01000005.1 Escherichia coli strain 54-J118-A entry5, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     40941	    29	 100.0	    32	.............................	AGAATCTGGACACTGCATATACCGCAATCCGT	
     40880	    29	 100.0	    32	.............................	CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA	
     40819	    29	 100.0	    32	.............................	GAAAAGCTACTTTTGTGTTCAACTGATGCATT	
     40758	    29	 100.0	    31	.............................	CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 	
     40698	    29	 100.0	    32	.............................	TTGCAAACCGTGGCAAACGCAATTAACAAAAA	
     40637	    29	 100.0	    32	.............................	CGATAGCATTCGCCCGACTCTAACAACGGGGT	
     40576	    29	 100.0	    32	.............................	CAAAATCCTGCCGGGAAAAAATCGACAACCAT	
     40515	    29	 100.0	    32	.............................	CCGGTGTAATCAAAGAGAAAAATCGCCTTTTT	
     40454	    29	 100.0	    32	.............................	AGTTAAGAGGGGGTTTTTCCCCACCGTTCAGG	
     40393	    29	 100.0	    32	.............................	GTCATCACGATGAATCAAAATTTCGCCCGGCT	
     40332	    29	 100.0	    32	.............................	CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG	
     40271	    29	 100.0	    32	.............................	ATTGTTATAATTATTTATTGAAATATCATTCC	
     40210	    29	 100.0	    32	.............................	AATCTATTGTGAATTTGAAATGGTCCAGCACT	
     40149	    29	 100.0	    32	.............................	GGTAAAAACACGGTCTGAACCGACATTCATGT	
     40088	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TCAACGCGATTTTTTCCACGCGTCGCACACCCAATGGATATTAAAGGTTACTGGCAGAAAACTTTAATTCAGGCTCAAAACGCCTTAACCGTCTTTCCTCTAAAAGCAAAAGTCGCGCCTTTCAACGGAATTAATACGCTGTTTCCTTTTATTGAGAATCCGACACCGTTACAGCAAAAGGTGCTGGATCTGGATATCAGCCAGCAAGGACCGCAGTTATTTATTCTGGAAGATGTGACTGGCGCAGGTAAAACAGAAGCGGCGCTTATCCTGGCGCACAGGTTGATAGCTGCGGGGAAAGCTCAGGGGCTGTTTTTTGGTCTGCCAACAATGGCAACGGCCAATGCCATGTACGATCGGCTGGTCAAAACCTGGCTTGCTTTCTATTCGCCAGAATCCCGCCCCAGCCTGGTGCTGGCACATAGTGCCCGCACATTAATGGACCGCTTTAATGAATCACTCTGGTCTGGTGATTTAGTCGGGTCAGAAGAACCGGATGA
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.24   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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