Array 1 15311-15020 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCF01000052.1 Prevotella copri strain iAK1213 NODE_42_length_20565_cov_82.6429_ID_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15310 30 70.0 35 C.G.ACACCCT................... TACAACTGATGAGCCGCATAAAGCAACGATTTTAA 15245 30 100.0 36 .............................. TACAACTTCTGACTGAATCTTATTAGTAAGGTTAAG 15179 30 100.0 35 .............................. TACAACAACCATATATCACATAGTCAATGGTAAGA 15114 30 100.0 35 .............................. TACAACGCAAAGTTCCAAAAGTAACACCATCTTCT 15049 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 93.3 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATCAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAGCAGATGGCGGCGGTTGATGCTAAGATGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCATCGTGAATCTATTTGAGAATATCACAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACACTTACTTTGCAAGCGACGGCGAAGGCGTGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACCCAGGAGATAAAGACGCAGAACCAGCCCAGTTGTGGTTTGATGTAGGAATTAGGGTGTCCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAA # Right flank : TATTATATACACGAGAATGGCATAGGGGCTGGCGCAGTTTCTGAATATCTTGGAATATAGGCAAGAAAGAGTCTTGTTCTCCACGGACTTCAATCTTTTCAAAAGAAGAACGGAAAAGATAAAAGTATCTCTGTCAGTATATGATAGTGCGGTAAAATGTATTGAGGAAGTGGAATGTGGCAAAAGAACTCAGCAAAACTATTCTTCTGAACTAAGAAACACCATTTGCCCAATAGATAAGAAAAACAATGCTGATGTGACGATAAGGGCCAACACGCCGTAGATTGATTGGGGATTGTTGACACAGTATCCTATGCAGGCAACCCAAACAGCGAAGGACAAAAGGCTGTTGTCACCCAACGCTCATATTTCTTAGAGTGCTTCGGGGGAGTATCTTCGCCTACTACTTCAATGCTAACGATTTCTACCTTTATTTCATGTTCGGGCTTGTTCGATTCTTCGTTGTTGTTTGCAGCGTCTGATATGCTGTTGTTGTTCTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 16131-15514 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCF01000052.1 Prevotella copri strain iAK1213 NODE_42_length_20565_cov_82.6429_ID_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16130 30 100.0 35 .............................. TACAACAGCCCCGTAGTGGTGGCGAGGAAGCAAGA 16065 30 100.0 35 .............................. TACAACGATAAGAAAAAATTAAAAACGGTCCTTAC 16000 30 100.0 35 .............................. TACAACATATGTAGCCCCGAATTACGGGGCTGAAG 15935 30 100.0 35 .............................. TACAACGTTTGCTGCATGCCAATTGAATCCAACTC 15870 30 100.0 35 .............................. TACAACTTCAAAATCGTTGAGGGGCGCAGTATCAG 15805 30 100.0 35 .............................. TACAACAGCAGATGGCGGCGGTTGATGCTAAGATG 15740 30 100.0 36 .............................. TACAACTTCATCGTGAATCTATTTGAGAATATCACA 15674 30 100.0 36 .............................. TACAACACTTACTTTGCAAGCGACGGCGAAGGCGTG 15608 30 100.0 35 .............................. TACAACCCAGGAGATAAAGACGCAGAACCAGCCCA 15543 30 76.7 0 .....................T.GGGTG.C | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.7 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAAATAAAAAAACTTTCCTTACCTATTATGACATGACTGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTGTTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCTGCTTCTCTTTTTCGTAAAAACTTGGAGAAAGATGGTTTCTCTATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATGTAAAACGGGTAAAATCTTTGCTTCCGGAGGCTGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGCGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGTTTGTTATGCGCTGAAAATCAGTATGTTCAAATCTGTAG # Right flank : CAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCTATGTAGGAATCAAAAGATATACAACTGATGAGCCGCATAAAGCAACGATTTTAAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCTGACTGAATCTTATTAGTAAGGTTAAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAACCATATATCACATAGTCAATGGTAAGAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACGCAAAGTTCCAAAAGTAACACCATCTTCTGTTGTGGTTTGATGTAGGAATCAAAATATATATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //