Array 1 356573-360705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAW010000004.1 Listeria monocytogenes strain 117437 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 356573 36 100.0 30 .................................... TGGTCCGTACTACATTTCCAAAAAAGGTTC 356639 36 100.0 30 .................................... TCTAAAACATTCATAAACCTTTTAACATCA 356705 36 100.0 30 .................................... AATTGGAAGTTCATTTCCTTCGTTTTTTGG 356771 36 100.0 30 .................................... TGATAAAACGATTCAACCGCAGTCAGTTGT 356837 36 100.0 30 .................................... CATAGTTAAAGCCTTCTAGTTGAGGAACAA 356903 36 100.0 30 .................................... TATACTCTTATCCAATTGTTGTATGCCTTC 356969 36 100.0 31 .................................... CAAACTTCAACTTCACCTGACGCATTTGCCA 357036 36 100.0 30 .................................... CTTGTTCGTGCATTTCAGTTGCCGCTTTTA 357102 36 100.0 30 .................................... TGGATGAATTGAAAAAGAACTCCATACTTT 357168 36 100.0 30 .................................... TTAATACGAAATTAAATGTACTATACAACA 357234 36 100.0 30 .................................... TGGCTGCTTCTCTGTTTTATCAAGCCAGTC 357300 36 100.0 30 .................................... ATTTTCTTGCCAACTATTAGCTGAAAGAGT 357366 36 100.0 30 .................................... CGACAACAGTGGTATTCGTGAAGAACTCCC 357432 36 100.0 30 .................................... TTCTTAACATTACTACTTAACGTCCTGAGA 357498 36 100.0 30 .................................... ATAAAGCATATGTGGAAATGGTAGACGCGA 357564 36 100.0 30 .................................... TTAATGTGTCGCAACGATGTATTTGTAATA 357630 36 100.0 30 .................................... TAACAGTATTAAATACCTTATATAATTATA 357696 36 100.0 30 .................................... CTCTGTGAGTAGATATTTACCTGTTGATCT 357762 36 100.0 30 .................................... TGGCGGCAAGTGCAGCATCTGTAATTGCAA 357828 36 100.0 30 .................................... TAGTGACCTGGCAACACTACCTGTTCCTGC 357894 36 100.0 30 .................................... TGGGCATTTGATGCAGTAAAAGCGAATGAT 357960 36 100.0 30 .................................... GAATTAGAAATGGGTGAAAACTCTATATAC 358026 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 358092 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 358158 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 358224 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 358290 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 358356 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 358422 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 358488 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 358555 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 358621 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 358687 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 358753 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 358819 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 358885 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 358951 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 359017 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 359083 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 359149 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 359215 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 359281 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 359347 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 359413 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 359479 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 359545 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 359611 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 359677 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 359743 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 359809 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 359875 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 359941 36 100.0 30 .................................... GTGTGTATTTGAAAACGCTTATCTCTTGCG 360007 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 360073 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 360139 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 360205 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 360271 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 360337 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 360403 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 360469 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 360535 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 360601 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 360667 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [360692,360698,360701] ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //