Array 1 190405-189887 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKO01000007.1 Salmonella enterica subsp. enterica serovar Stanley strain I12 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190404 29 100.0 32 ............................. GCGGGACCTCCAGCGCCACTGCTAATATTCGT 190343 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 190282 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 190221 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 190160 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 190099 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 190038 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 189977 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 189916 29 93.1 0 A...........T................ | A [189889] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208020-206528 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKO01000007.1 Salmonella enterica subsp. enterica serovar Stanley strain I12 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208019 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 207958 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 207897 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 207836 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 207775 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 207714 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 207653 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 207592 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 207531 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 207470 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 207409 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 207348 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 207287 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 207226 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 207165 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 207104 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 207043 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 206982 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 206921 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 206860 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 206799 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 206738 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 206677 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 206616 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 206555 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //