Array 1 262049-264726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZD010000002.1 Listeria ivanovii strain FSL L7-0121 NODE_2_length_432579_cov_169.219969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 262049 29 100.0 34 ............................. CTGTCACAAACAATCTTAATTCTCTTAAAATATC 262112 29 100.0 35 ............................. GACCAGTAACTTTTTTTATAATACGACGTGACTTT 262176 29 100.0 35 ............................. TCTTTAGCAGGATTAAATGTTGTAATCGTTGTGTA 262240 29 100.0 37 ............................. AAAATTAGCAATAGAGGAACACTAACTAACGAAATAT 262306 29 100.0 37 ............................. TCAACAAGCAGGCGCTGGATATGGTTAACAGTGTATT 262372 29 100.0 36 ............................. ACGATCAGATAAGCCACAATGGACAAGTTAATGCAG 262437 29 96.6 37 ..........T.................. ATCATTGAATATCTACTATCTTGTGATGATAAAACAG 262503 29 100.0 36 ............................. ATTATTGGATGGTTCAAAGAAAAATGGGAACTAATA 262568 29 100.0 33 ............................. CACGTTTCGGCAGAAAAAGCGTTGGGGCTAAAA 262630 29 100.0 34 ............................. ATCGTTCCTAGATTTTTTGCATTCAACGGTAACA 262693 29 100.0 34 ............................. AATGCTGCCCAGCTCGTAATACTAGCGCCTTCAA 262756 29 100.0 36 ............................. GCAGATACAATTAATAAGCAGGCGCTGGACATGATT 262821 29 100.0 38 ............................. CTTGATAAAAACACAGCACAAGGAGCCGGTAGCGCTCT 262888 29 100.0 35 ............................. CATGTCCCCCACATATCCACCCATAAAGCCCGGTA 262952 29 100.0 37 ............................. TTTAGAATGACCTTTAAGCCATCGTCTTTCGTTTCTT 263018 29 100.0 34 ............................. GGCTTTCGAAGAGACTGGTATTCCACGTCGCTCC 263081 29 100.0 35 ............................. ATGCTTTTTTACCAGAGTTGTGAACCTCTATATCA 263145 29 100.0 35 ............................. CCGCCTTTCGTTTTCTTCACTGCATCCGCGTAACC 263209 29 100.0 37 ............................. AACCTACACAACTTGATACAGAAAAAGTACAAATTGC 263275 29 100.0 36 ............................. ATCACCCCGTCGGAACGTATGCGTCGCCTGAGCCGT 263340 29 100.0 36 ............................. TCGCATCTTCCGGGTGGATCCAGATGGCTTCACGGT 263405 29 100.0 36 ............................. AATATAAAAGCCCTCCCAGTTGGGAGAGCCTTAAAT 263470 29 100.0 37 ............................. AATTTCAGGTAAGCTATGATACTCGTTCAGTAGATTA 263536 29 100.0 34 ............................. CCATTTTTAGTGCTGAAAGCTTTATGTCGTCCCT 263599 29 100.0 36 ............................. CTAGATTTCCCAATCCTTGCACTATAGAGCCTGTCG 263664 29 100.0 35 ............................. TCGTACGCCGGAATGGTGACGATAGATATTTCTTC 263728 29 100.0 35 ............................. TGACGTACCACCTGTATTTTTTTCGGCTGATGCAA 263792 29 100.0 35 ............................. CGGCAAACCTACCACTGCCGAAAACGTGCAAACAA 263856 29 100.0 35 ............................. CCAGAAAATGGCTTTGGAAAAACTACTATCACATG 263920 29 100.0 36 ............................. TATTGACGAATTCGTCTTTTAATCCAATCAGCAAAT 263985 29 100.0 38 ............................. CACTTCCATCGAACTAATCTTCTGCCTAAGTTCAGTAC 264052 29 100.0 37 ............................. AATTATAGGTAAAGCAACAAATAGTGTGTTTAAGTTT 264118 29 100.0 35 ............................. CAATACTATTCAGTGCTTTAGCTTGTTTGAGTTGA 264182 29 100.0 34 ............................. AAAGAAATATCCGATGTTTGTTCAACTCCTAGAG 264245 29 100.0 36 ............................. AAATTAATCAAGTTTTAGAAGGTGCAGGAGTATTTA 264310 29 100.0 37 ............................. ATTACATGCCCGACTAGATAATCTTGATAGACGTTTG 264376 29 100.0 35 ............................. GTATGCGTATGACGTAGCTTATGCAATGTTACTGA 264440 29 100.0 34 ............................. AGCGGTATGTTGTTCGAAATCTCGGCAAAATCCG 264503 29 100.0 36 ............................. ATTGAATGCGACGCCTTTTCGGCTATTTTCGTAGAC 264568 29 100.0 34 ............................. ACAATTATTGAAGAATTTGACGCAACTCGCGTTA 264631 29 100.0 38 ............................. TTGATAACGTACACAGGAACTTTTAATTGACGATTAGC 264698 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 42 29 99.9 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAGGAACGAAGTCGACGTTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGAAAATTCAATATATACCAAGAGACAGATGCGCTTTTCGATGTGTGAAAATGAAGGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGGAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGAGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 277423-279092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZD010000002.1 Listeria ivanovii strain FSL L7-0121 NODE_2_length_432579_cov_169.219969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 277423 29 100.0 37 ............................. ACAGGCGATTTCTAGCATCAAACATATTATTGAATTG 277489 29 100.0 38 ............................. TCTGCTAGCTCAATTTGTGTTCCCGTATTTTCTGTCAG 277556 29 100.0 35 ............................. CTACGAAAGAAGAGTTAGACAGCATGACCTTGGCG 277620 29 100.0 36 ............................. AGGATAAGGCATCAAATAAAGCGGTATCCAACTCAG 277685 29 100.0 38 ............................. AAGGTACTAAGCCAGAAGTAAAAGTGGAGGCAAATACG 277752 29 100.0 37 ............................. TAACTAATTCAAACCGACTTTCTAACTCCCAGTTATG 277818 29 100.0 37 ............................. TTATTAAAGTGGAACAGAACTCTGACCCGACTAACCG 277884 29 100.0 37 ............................. CACATCGTCCCATTCTAGCTTCTCGCTAATCATAAAG 277950 29 100.0 35 ............................. TCCATTTGGTCGTTGCCGGGATGCTCTTTCAGGTG 278014 29 100.0 37 ............................. GATTTTAAATGTCTTCCGCATTAGCAATAACCTCGTG 278080 29 100.0 36 ............................. AAATTAAATAAATTTATAATTAGAAAAAGAGCGCAG 278145 29 100.0 37 ............................. CGCGGAATATTGTGCAGAACAAAACGCTAAATTTGAG 278211 29 100.0 38 ............................. CTATTTTTCGTTGCGTAAATCACCGGCTGGTTTTCGCG 278278 29 100.0 37 ............................. TTATTTCGATATGGATCTAAGAGATATAGAGAGTATG 278344 29 100.0 36 ............................. CGAATTTCTTGCCTTTATCTGAACGATAAGCACCCG 278409 29 96.6 36 .............T............... TCTTGATAACCTTGTTTATCATTATTCGGAGTCAGG 278474 29 100.0 37 ............................. ACAATTTTCGAATAAACACTACTAATGATATTAAAAG 278540 29 100.0 36 ............................. ATTTGCATCGCATAAATGCGTAACATCGCGTTAATG 278605 29 100.0 36 ............................. ACGATATTTACAATGAATCTTAAAGCAAAAGAAATG 278670 29 100.0 38 ............................. AACGGAGATTAGTTATATTGGTGTCAACGAAAAGACTG 278737 29 100.0 37 ............................. AATCGTCATAGCCTTTTTCTAGCTCTGCGAGTTCAAA 278803 29 100.0 35 ............................. TTCTTCGTAATGCTCATAAACAGCTGGGCTTCTTG 278867 29 100.0 36 ............................. GATAATGACATAAGTTGCTTCTGGTCCATTAAAGCG 278932 29 100.0 38 ............................. AGGCGTATAGCTTTACTTTTTACTGAAATGGATGTTCG 278999 29 100.0 36 ............................. ATCATCATAATGGCCATCACTCCAGCTGATACATTC 279064 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.7 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TTCTTAAAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAGGAATAAAGTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTATCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //