Array 1 32687-35151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXNL01000002.1 Methylacidiphilum fumariolicum strain Fdl contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 32687 37 100.0 38 ..................................... TTCTTTTTCGGCTTTCAGTTGATGAAGCCTTCCTTTAA 32762 37 100.0 39 ..................................... CCCGTAAATCACCCCACCTTTTGTTAGCATATGAGCTCT 32838 37 100.0 37 ..................................... AATTTATCCCACTCATACTTCAGAGTAACTTCTTCTT 32912 37 100.0 40 ..................................... TGCCCATGATCTCATATGATATGTTATTGAAATAATACTT 32989 37 100.0 38 ..................................... CTTCTAATCTTGATTGCTGACCGTTTTCCCCGCTTAAG 33064 37 100.0 37 ..................................... AAGTTCAAAGTAAATCCCATCCAATTTTCGATAGATA 33138 37 100.0 37 ..................................... CAAGCCCTGAGGGTGAAGACTTTTTCCTGATAAAGTC 33212 37 100.0 40 ..................................... CTGCTATTTCACCTTCACCTTCTAACTTGAACCGCTTCTC 33289 37 100.0 39 ..................................... AAGAAACTCCAAGAGCCTTCTTCAAGGCCTCCTGGAGGC 33365 37 100.0 42 ..................................... CAACAGCTTTTTTGTAATCGCCTTGAAGAGAATTCTCCAAGG 33444 37 100.0 42 ..................................... CCTCATCCTCAATAGGGGAAAATTTGTCCATAATTTTATGAG 33523 37 100.0 39 ..................................... CCTCATCTAAAGCTCCCCATTCACGATACATAGCGTTAA 33599 37 100.0 37 ..................................... TCAAGTCCCAGTCTCTTTTCGTCATATATCCTCCCTT 33673 37 100.0 39 ..................................... ATTCCTTTTCAAGTTTGCCTTTATTCTTCTCACTCACTC 33749 37 100.0 40 ..................................... ATGTTGTTATGATAATATTTCATGGGGATTTTGTGTTCCC 33826 37 100.0 35 ..................................... TTTCTCATCTTCTGGCCACTTCCATAAGTTTTTCC 33898 37 100.0 37 ..................................... ACCTTCTCTTCCTTTAATAGTCGAATATAAGCCATTA 33972 37 100.0 38 ..................................... TTAAATGTTTGGTACAGCAGGAGAAACTTCCTGCTGTA 34047 37 100.0 40 ..................................... AACTCATTCCAGTTTTGGAACTCTGGCTTACCCTCTGGTA 34124 37 100.0 42 ..................................... TTTCCTTTGTTACAGGGTCAAAATTCGACCACTGGCGAAGAA 34203 37 100.0 41 ..................................... AAATAAATGCCAATACATATCCTCCCCTAAGGGAAGATATG 34281 37 100.0 39 ..................................... TCGATTAATTCTTTCAACAAAGACTCCCAATTGTGGTCT 34357 37 100.0 38 ..................................... AAAACCAAATATTTCGACCTGCTATATTCCGGATACTC 34432 37 100.0 38 ..................................... AGATAAACTTCTTGGCTCTAGGGGATTGAACCCTAAAG 34507 37 100.0 39 ..................................... ATACCAGCGAGCATTTCTGGCCCGATAAGCATGACTTCT 34583 37 100.0 39 ..................................... AGACCATACACTATCACTTCCTCGTCAGAGTAGTTGACT 34659 37 100.0 40 ..................................... TTCAGGAGTGAGGTAGTATCTCTTCATATCCTCATCCCAA 34736 37 100.0 39 ..................................... AATGTCTCGAATCATCTTAATTTCCCAGTCTGTTAACAT 34812 37 100.0 39 ..................................... ACCAAGAAGCTTCAGGCAAGGGGAATACATATAAAATGT 34888 37 100.0 37 ..................................... AAAACTCAACCCCAATAGACTTCTTCAATGCTTCCTG 34962 37 100.0 38 ..................................... TACAATAAAGATAAAGGAGGTAAAAATGAGGGAAGATT 35037 37 100.0 41 ..................................... CCAGGAACTGGGGGCTCGTCACAATATTTTGGTAACTCATA 35115 37 91.9 0 ..........................ATG........ | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.8 39 GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Left flank : GGAATAAGAGTCCAGTTTAGCGTTTTCGAATGTTATCTTGAAGAATCAGAACTAGAAGAATTGTGGCAAAAGCTGCTTGCGGAAATTGATCCTAAAGAAGACAGGATTGTCGCCTATAAAATAGATGCTAGACTAGCAAAGGAGATTAGAACTGCTGGAACAATGGTGTGTTCTGAAAAAGTAATCTGCTTTTTGGTATAAACTCTATTGCAAATTGGAAGAAATTTTTATATTTACCTAGCTTGTATCTTCTACTTGCATAAAGAATGACGGTAGTTTTTTTGTGTTTAAAAATGCAAAAATGGTTTTTTAGGTATTAACACCAAACCACTAAAAAATAGCCATGCCAATACCTAAAGTTATATTATTGAATATAAATGACTTATTAAACTTTCTGTGTTTTTGGGCTAATATAAAGCATAAACTGTACCAACATAAAATTGGAATCAATGCCTATGAGGTTTTTTATTTTTTGATAATCAAGATGTTAGAAGACCGCA # Right flank : CTTTCTCTGCGAACTGGCATTCCGCTTCCTGGCAAATTTGGGGATTATAGGCATGGACGACTCCTTTCCGGCCTCTTCTTGCTGGTTATCCTGCCTTAATCTCGATGCTGCGGATCTTGATTAGGAAGATTTCTGGCCCTACCCAGACATCCTCGACCAGCATATTGCTCGCATGTCTCCGGTTTCGCTTTGTAATCCAGCCGTGATAGACGGGATCTGGCCCCAATGTCGAACGCTCGAGTACAGCCAGAGGTAGCTTTCGAGCTTTTGAGATCCCCGGAAGCTCCCGCTCTCCCAATGGGTGTGAGAAGGGAGAAGACGAGGACCATCATCCGTCAACAAGACATGCAGCTACAACCAGGTTCTCTCCTTATGACGCATAGGTCGGCAGCAGGACAAGCGGGAATGAGGTGTGCTTGCTTGATCGATTGAATGGTGCTCTTCAATCGCGATCGCTGACGAACGATCTGTTTGCGGCTATTTCCCTGTCTGTGCAGGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1121-799 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXNL01000012.1 Methylacidiphilum fumariolicum strain Fdl contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1120 35 100.0 37 ................................... CTCCTGTCATTGAATTTTATGGTTATCAGTTCTAATC 1048 35 100.0 37 ................................... CTTGCCATGACTGACTTCCATGCCAGGCCTAAAATCA 976 35 100.0 36 ................................... GTTTTCTGCCATGCTGGAAGGAATACCACCTGGATG 905 35 100.0 36 ................................... GATTGGCCAATGTGTGGCCAGGAAGGAGGAAAGATG 834 35 91.4 0 ............................A..G..C | G [801] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 98.3 37 GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Left flank : GAACCGTTACGCCGGTTGTTTTTCCGGGGCATTGGCAGCGGCGAGGTCGAAATAGGGAAGGTCGTTTACACACAATGTTGGCGGCGATGTTATCTGAGGCAGGCATTGAGGAGAATAGCGTAGAGCAATGCCAGGTGCGGCGAGAGCCATTTTTCAAGGGTTGCGAGTTGGCCCAACAAGCCAAGGCTCCACAACATCTTCTCGCTTTACCGCGAATGCATTTGGAATTAGTTTTAAAAGAAGAGGTTCAGGGGCCTATGCTCCTTGGCTTGGGACGCTTTGCTGGACTAGGTTGTTTGGCTGGTGTTAATGTTCTTTGAGAACCGTTGGGTTTGCGAGCGCTTCGATGCTCATCGAGGGTAGCAGTCGTGCTCGAACATTGCGTGACAATGAGTTGTGAAAAATTATATGTGGTTATGGCAGAAGCGATATGTAGGTGGTGACACACGCTCGCAAATGTGCAAATTGTGTGTTGAGTATCAATTGGTTGCAAGGCGGCA # Right flank : TCATGATGACTTGTGAGCCGGTTGGTAATAGCCGGCTCATTTGTTTTGTCAGCTTTTCAAAAGCTCACCCTAGAGAAATTTTTACAGGCCCACCATATTTGGAAAAAGGAAAAAAATAGAGCACTAAGCGCCAGGATGCTCTATAACTCGATTCTTTAACCTGCTAGCTATTGATGATGACACTCGCCAAGTCGTATAATTCGATTTTAACGAATCTTCCAGATATCATGAGTCTAGTCACACCACGTTCGCAACATCTTCTAGCTTTACCGTGAATGCATTTGGAATTAGTTTTAAAAGGAGATGTTCGGTGGCCCATACTTCTTCGCTTGGGACACTTTGTTGGACTAGGTTGTATGCCACCCTTGGTCCAGGATCGATTTGTTCATCCGGCTCTTCGCCTGCCCTTTCTTTCCTGGATTTTCTCTCTTCTACTTGGCTGACCGGGTTATGTTTTTGATCGGCAAATCCTCTATAAGCCCCACCGCGTGGGCTTTGCT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //